Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017551 pacid=23163156 polypeptide=Lus10017551 locus=Lus10017551.g ID=Lus10017551.BGIv1.0 annot-version=v1.0 ATGGCAGTTTCAAGATTCGCCGCCGTGGGTGCAGTTTGTGTGGTCCTGATGTTTGTCATTGCTCTGCCTGCTGCAGCTCAGGCTCCGATCATGGCTCCAG CTCCCGCCCCCGCCGGCACCAGCGATGAAAAAACCCTTAATAAGCTCTTATCAACTTGGGCTTTCGAGGGGCATAGGTTATGGACGGATCCAAATCAGTC AGCAAAATACAAAGCGGGGTCCACGTATATTGAAAACCGTGATGGGCTGAGCTGGATTTCAGATGGGGGACCATTGAATGGCAGCAACGAGTAG
AA sequence Show only first row Show all	>Lus10017551 pacid=23163156 polypeptide=Lus10017551 locus=Lus10017551.g ID=Lus10017551.BGIv1.0 annot-version=v1.0 MAVSRFAAVGAVCVVLMFVIALPAAAQAPIMAPAPAPAGTSDEKTLNKLLSTWAFEGHRLWTDPNQSAKYKAGSTYIENRDGLSWISDGGPLNGSNE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017551 [exp]	0	1
AT1G73120			unknown protein		Lus10022961 [exp]	1.0	0.9811
					Lus10014692 [exp]	1.4	0.9677
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	4.9	0.9339
AT5G11280			unknown protein		Lus10026797 [exp]	12.5	0.8623
					Lus10033923 [exp]	13.7	0.9046
AT4G32270			Ubiquitin-like superfamily pro...		Lus10006187 [exp]	16.4	0.7952
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10039462 [exp]	17.1	0.9346
					Lus10027902 [exp]	17.7	0.9480
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	18.1	0.8916
					Lus10042586 [exp]	19.1	0.9090

Compare expression of checked genes

Lus10017551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.