Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41761 94 / 2e-25 unknown protein AT3G09950 83 / 2e-21 unknown protein AT3G55570 79 / 1e-19 unknown protein AT3G11405 59 / 2e-11 unknown protein AT5G55620 56 / 7e-11 unknown protein AT5G06010 53 / 9e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000541 [exp] 152 / 8e-49 AT5G41761 96 / 2e-27 unknown protein Lus10012634 [exp] 86 / 3e-22 AT5G41761 85 / 6e-23 unknown protein Lus10039065 [exp] 74 / 8e-18 AT3G09950 85 / 6e-23 unknown protein Lus10038794 [exp] 74 / 1e-17 AT3G09950 82 / 6e-22 unknown protein Lus10026710 [exp] 45 / 2e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G136700 [exp] 107 / 7e-31 AT5G41761 102 / 4e-30 unknown protein Potri.014G095000 [exp] 93 / 2e-25 AT5G41761 97 / 1e-27 unknown protein Potri.014G095100 [exp] 87 / 4e-23 AT5G41761 92 / 3e-26 unknown protein Potri.002G167900 [exp] 86 / 8e-23 AT5G41761 86 / 1e-23 unknown protein Potri.012G031900 [exp] 83 / 1e-21 AT5G41761 88 / 2e-24 unknown protein Potri.006G017700 [exp] 82 / 9e-21 AT5G41761 83 / 6e-22 unknown protein Potri.001G313700 [exp] 80 / 2e-20 AT3G55570 93 / 2e-26 unknown protein Potri.001G313801 [exp] 73 / 3e-17 AT3G55570 85 / 1e-22 unknown protein Potri.001G364550 [exp] 37 / 0.001 AT5G41761 39 / 5e-05 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017552 pacid=23163172 polypeptide=Lus10017552 locus=Lus10017552.g ID=Lus10017552.BGIv1.0 annot-version=v1.0 ATGGAGCTGAGAACAAGTAGTCAGGGAGGCCAAGGGCTCCGAAGTGATGGCATTGCTAACTCCACATTGCCTGCTCCGGTGAGCGAATCAGGAGAGAACC ACCTCACACTACCCTTGATGTCGACTTGCCAGAATTCTGTAGAAAACACCAAACGCAAACATCGATCCAGGAGCTCCAAGACATCGAGTAAAATGAATAT GAATGCAATTAGAAGCTTGCTCTCTGGCTCCGCTTTCGGGTACGAATCAAGGAAGATGGATAACAAACAAAAGGGTTCGTCATCAGCATCAACATCAGGA TTCAGGATGCCACTGCACTGTCCAAGGTTCAAGAAGGAAGACTATGAGAGAATGCCTGAATGGAGAGTTGAGTGCTTACTCAAGGAATATGGTTTGCCTG TTATTGGAGATGTTCATGAGAAGAGGAAGTTTGCCATGGGAGCTTTTCTTTGGCCTTCTGATGAGCATTGA
AA sequence Show only first row Show all	>Lus10017552 pacid=23163172 polypeptide=Lus10017552 locus=Lus10017552.g ID=Lus10017552.BGIv1.0 annot-version=v1.0 MELRTSSQGGQGLRSDGIANSTLPAPVSESGENHLTLPLMSTCQNSVENTKRKHRSRSSKTSSKMNMNAIRSLLSGSAFGYESRKMDNKQKGSSSASTSG FRMPLHCPRFKKEDYERMPEWRVECLLKEYGLPVIGDVHEKRKFAMGAFLWPSDEH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41761			unknown protein		Lus10017552 [exp]	0	1
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	4.1	1.0000
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	5.8	1.0000
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	7.1	1.0000
					Lus10024141 [exp]	8.2	1.0000
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	9.2	1.0000
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016225 [exp]	9.7	0.9631
					Lus10013255 [exp]	10.1	1.0000
					Lus10013259 [exp]	10.9	1.0000
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	11.7	1.0000
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	12.4	1.0000

Compare expression of checked genes

Lus10017552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.