Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 392 / 7e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 359 / 6e-120 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 338 / 3e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G55550 309 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 229 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 224 / 6e-68 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 173 / 4e-49 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 172 / 8e-49 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 160 / 3e-44 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 154 / 1e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000537 [exp] 748 / 0 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 551 / 0 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 536 / 0 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 525 / 0 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 422 / 1e-143 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 409 / 2e-138 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 353 / 2e-116 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10006396 [exp] 328 / 5e-109 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 246 / 2e-76 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010200 [exp] 518 / 0 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 517 / 0 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 450 / 1e-154 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 449 / 2e-154 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 449 / 4e-154 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 424 / 2e-144 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 252 / 7e-78 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 246 / 7e-76 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 243 / 8e-75 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 238 / 5e-73 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017555 pacid=23163145 polypeptide=Lus10017555 locus=Lus10017555.g ID=Lus10017555.BGIv1.0 annot-version=v1.0 ATGGAGCTTGGAAAGCTTTTCATTGGTGGGATTTCATGGGACACGAATGAAGACCGTCTTAGGGAGTATTTCCAGGCGTTTGGGGATGTTGTGGAAGCTG TGATAATGAAGGATAGGTCCACTGGTCGAGCCCGTGGCTTTGGATTCATTGTGTTTGCCGACCCTGCTGTCGCTGAGATGGTTGTTTTGCAGAAGCACCT CATAGATGGTAGAAATGTTGAGGCGAAGAAAGCAGTTCCAAGGGAAGATCAGAGCAGTCTGACTAGAAGCAACAACAGCAGCATTCAAGGGTCACCTGGT CCAACCCGTACCAAGAAAATATTCGTAGGAGGTTTAGCATCCACAGTCACAGAGAGTGACTTCAAGAAGTACTTTGATCAGTTTGGAACGATTACTGATG TTGTGGTTATGTACGATCACAACACTCAAAGGCCAAGAGGTTTCGGATTCATTACCTTTGATACTGAGGAAGCTGTTGATAAAGTGCTGTACAGAACGTT TCATGAACTGAGCGGAAAAATGGTGGAGGTCAAGCGCGCTGTTCCAAAGGACTTATCATCTGCCGGGACGACCAGGAACCCGTTAGCTGGATATAATTAT GGCATGAATAGAATCAATAGTTTATTTAATGGTTATCCTCAGGCACACAATCCTAATTCTGCTGTAGGTTCGGGGCTGAGAATGGATGGAAGATTCAGTC CAGTGACTGCAAATCGCGGAAGCTTTTCTCCTTTCAATACTGGCTACGGATCAGGTTTAGGTTTTGAGCAGGGTATGAGTTCGAGTTATGGTGGCAATTC AAATCTCGGCTCTAACATGGGGTTTGGACGGCTGAGTCCTTACAGTGGGAACTCAAGCAGGTATGCCAGCCCCATTGGGTATGGAGCAGGAAATGGAGGA AACAATTCTGTCTTAAGTTCTGTTCCACGTACATTGTGGAGCAATGACAGCATGCAAAACGATTCAAACTCTAACGGTCAGAATGGGTTTTTGAGTACTG GAGGCTGGAACTCTGGACTCGGTTCCTCCTTTGGCAGTTCTGGAGCTCTATGGGATAGCTCCACTAATATGGGGCAAGTAGCTGGTGCTGGCTCTGCATC ATATAACAATGGGAGTGGAGAGTATAGTATTGGTCTTGGAGGAGCAGGATATGGAAGAACTAGTGGGACAAGTTTTGCGCCGGTACCATCTCGCGCTGCT CCAAATGGTGGAGGCTATGACAGGGCTTATGCTGACATTTACGAGAATGGTGGTTCGCTCTATGGAGATTCCTCTTGGCAATCTTCCACATCTGGGCTGT TCGATTTCGGCCTGGGAAATTCAGCTTCCGATGTCATTACAAAGAACGCTGCAGCTTATGGTGGTGGTTATGGCATTGCTGATACGCAGCCAGATAGAGG CAAGTGTTTTCCTTTCACACTCCCCTACTCCATTCAGATTCTCTGTACCGTCAAGAATTGCTGCTTAGGAGCAAAAAACACGGGTGTACTTACTACTATA GGTGAATCAGTGCATCACAATATTCAGTACATTTTATATGTTTCCTCATCACTTGAGATTAGAAGGTGA
AA sequence Show only first row Show all	>Lus10017555 pacid=23163145 polypeptide=Lus10017555 locus=Lus10017555.g ID=Lus10017555.BGIv1.0 annot-version=v1.0 MELGKLFIGGISWDTNEDRLREYFQAFGDVVEAVIMKDRSTGRARGFGFIVFADPAVAEMVVLQKHLIDGRNVEAKKAVPREDQSSLTRSNNSSIQGSPG PTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDTEEAVDKVLYRTFHELSGKMVEVKRAVPKDLSSAGTTRNPLAGYNY GMNRINSLFNGYPQAHNPNSAVGSGLRMDGRFSPVTANRGSFSPFNTGYGSGLGFEQGMSSSYGGNSNLGSNMGFGRLSPYSGNSSRYASPIGYGAGNGG NNSVLSSVPRTLWSNDSMQNDSNSNGQNGFLSTGGWNSGLGSSFGSSGALWDSSTNMGQVAGAGSASYNNGSGEYSIGLGGAGYGRTSGTSFAPVPSRAA PNGGGYDRAYADIYENGGSLYGDSSWQSSTSGLFDFGLGNSASDVITKNAAAYGGGYGIADTQPDRGKCFPFTLPYSIQILCTVKNCCLGAKNTGVLTTI GESVHHNIQYILYVSSSLEIRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	1.0	0.8390
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	1.4	0.8120
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	4.9	0.7747
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10037354 [exp]	5.5	0.7872
AT2G41150			unknown protein		Lus10018111 [exp]	7.5	0.7486
AT2G26570		WEB1	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10035778 [exp]	8.9	0.7353
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	9.8	0.8080
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	12.4	0.7392
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	13.6	0.7171
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	14.9	0.7535

Compare expression of checked genes

Lus10017555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.