Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07740 366 / 4e-115 actin binding (.1) AT2G25050 295 / 3e-91 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G58160 278 / 1e-84 actin binding (.1) AT1G31810 258 / 2e-77 AFH14 Formin Homology 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015724 [exp] 429 / 1e-140 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 425 / 4e-138 AT5G07740 714 / 0.0 actin binding (.1) Lus10035830 [exp] 302 / 7e-93 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 299 / 2e-91 AT5G58160 608 / 0.0 actin binding (.1) Lus10003956 [exp] 271 / 1e-81 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10023804 [exp] 268 / 7e-81 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10015725 [exp] 208 / 2e-66 AT5G07740 282 / 6e-88 actin binding (.1) Lus10024450 [exp] 186 / 3e-52 AT5G58160 600 / 0.0 actin binding (.1) Lus10007447 [exp] 159 / 9e-43 AT5G58160 604 / 0.0 actin binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061001 [exp] 403 / 2e-129 AT5G07740 722 / 0.0 actin binding (.1) Potri.012G067900 [exp] 402 / 2e-129 AT5G07740 727 / 0.0 actin binding (.1) Potri.006G185501 [exp] 312 / 4e-103 AT5G58160 598 / 0.0 actin binding (.1) Potri.018G108000 [exp] 315 / 2e-98 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G263700 [exp] 298 / 2e-91 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 286 / 3e-87 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 263 / 7e-79 AT1G31810 718 / 0.0 Formin Homology 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF10409 [flax] [poplar] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Lus10017556 pacid=23163141 polypeptide=Lus10017556 locus=Lus10017556.g ID=Lus10017556.BGIv1.0 annot-version=v1.0 ATGGAAGAAGACGAGTACAAGCTCTACTTAGGTGGCATTGTAGCAAAGCTAAAGGATTACTTTCCCGATTCTTCGTTTATGGTGTTCAACTTTAGATCAG AATTATTGGGAGATAGTCGTCGGAGCCAAATTTCTGACATCTTGACGCAGTATGACATGACAGTTATGGACTACCCTCGTCAACACCAAGGATGTCCATT GCTGCCTCTGGAGATGGTTCATCATTTCCTACGATCCAGTGAGAGCTTGTTGTCATTGGAAGAGGGGCAGCAGCAAAATCATCATGTGCTGTTAATGCAT TGTGAAAGAGGTGGATTACCTGTGCTTGCTTTCATGCTTGCTGCTCTTTTGTTATATAGGAGGGAGTATATGTCTGCGCACAAGACTCTTGGTATGCTCT ATAAGCTGGCCCCTCGAGAGCATCTCCATTCTTTGTCGGCTTTAAATCCCTACCCTTCCCAGATTAGATATCTTGAGTATATTTCTAGAAGAAATTTTGG AGTTGATTCCGTCGACACACCATTAATTCTCGACTGCTTGATGCTTAGATCCATCCCAGTAGTACTACTGTTTGAAGGAGGAGGACAGGGTACTTGCAGT AGGCCAGTTGTTGTGCGTGTTTATAGCCAGGAGGACAGTACCAATAATAGAACGTCGAAGCTTTTGATGATGTCTCGTGAATTTATACTGCAGGAATTAG AGTGCAAGCTTGTGAAAGTAGATCTTAGGTGCCGTGTTCAAGGCGATGTTGTTATTGAATGTGTCCACTTAGACCTCCTGCAGCATGAACAGACCATCTT CAGAGTGATGTTCCACACAAAATTTGTGCGAGCAAATATTTTGATGCTAAGTCGTGATGACATTGATATTATGTGGGATGCCAAAGATCGATTTCCACGG GACTTCAGAGCAGAGGTATATTTTGCTGATGCCGACACTATTCCACCACCACCACCTCCCCCTCCGCATTTCAATAATAATGGGATGACATTGACCATCC CGCCGCCTCCATATCTTCCTTCAAGGAGTGCCACTGTGCCGCCACCACCACCTCCTCGTGTTTAA
AA sequence Show only first row Show all	>Lus10017556 pacid=23163141 polypeptide=Lus10017556 locus=Lus10017556.g ID=Lus10017556.BGIv1.0 annot-version=v1.0 MEEDEYKLYLGGIVAKLKDYFPDSSFMVFNFRSELLGDSRRSQISDILTQYDMTVMDYPRQHQGCPLLPLEMVHHFLRSSESLLSLEEGQQQNHHVLLMH CERGGLPVLAFMLAALLLYRREYMSAHKTLGMLYKLAPREHLHSLSALNPYPSQIRYLEYISRRNFGVDSVDTPLILDCLMLRSIPVVLLFEGGGQGTCS RPVVVRVYSQEDSTNNRTSKLLMMSREFILQELECKLVKVDLRCRVQGDVVIECVHLDLLQHEQTIFRVMFHTKFVRANILMLSRDDIDIMWDAKDRFPR DFRAEVYFADADTIPPPPPPPPHFNNNGMTLTIPPPPYLPSRSATVPPPPPPRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07740			actin binding (.1)		Lus10017556 [exp]	0	1
AT3G52020		SCPL39	serine carboxypeptidase-like 3...		Lus10039582 [exp]	4.9	0.8954
AT1G62790			Bifunctional inhibitor/lipid-t...		Lus10024591 [exp]	6.9	0.8743
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10038882 [exp]	9.5	0.8709
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	9.9	0.8930
AT1G13900			Purple acid phosphatases super...		Lus10026652 [exp]	11.7	0.8918
AT5G03690			Aldolase superfamily protein (...		Lus10035571 [exp]	12.2	0.8892
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10015004 [exp]	18.0	0.8675
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	21.1	0.8905
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10014657 [exp]	21.5	0.8527
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	21.9	0.8539

Compare expression of checked genes

Lus10017556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.