Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 651 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 644 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 604 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 316 / 1e-101 ATINT1 inositol transporter 1 (.1) AT1G07340 159 / 8e-43 ATSTP2 sugar transporter 2 (.1) AT4G36670 157 / 4e-42 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 157 / 5e-42 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT3G18830 155 / 5e-41 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16130 150 / 1e-39 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT1G50310 148 / 1e-38 ATSTP9 sugar transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039050 [exp] 781 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 773 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 756 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 699 / 0 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 689 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10028118 [exp] 597 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 597 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10025565 [exp] 333 / 2e-108 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10017560 [exp] 324 / 7e-108 AT4G16480 281 / 2e-91 inositol transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 743 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 718 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 686 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 337 / 6e-110 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 327 / 7e-106 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 278 / 2e-90 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 228 / 8e-72 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.009G113600 [exp] 169 / 8e-46 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 168 / 8e-46 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 166 / 5e-45 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10017559 pacid=23163095 polypeptide=Lus10017559 locus=Lus10017559.g ID=Lus10017559.BGIv1.0 annot-version=v1.0 ATGCTGGCAAGTCACCTCCAAGAACCCTTACATCGCCAGACTAGCATTCTCCGCCGGAATCGGCGGCCTCCTGTTCGGATACGACACGGGGTCATCTCCG GCGCCCTCCTCTACATCAAGGATGAGTTCTACTCCGTCAACAACAGCACCTTCCTCCAGGAGGTGATCGTCAGCACGTGCGTCGCGGGGGCCATCGTGGG CGCCGCCGTCGGGGGTCACGCGAACGACAGGTTCGGCAGGAGGAAGACGATCATGGCCGCCGATGCTCTGTTTTTCCTTGGCGCGGTGGTTATGGCTGCC GCTCCGTTTCCCGGAGTGATTATAGCCGGTAGGGTGTTGGTTGGTCTGGGAGTCGGGATGGCTTCCATGACTGCTCCGCTTTACATATCGGAAGCTTCTC CGGCGAAGATTCGAGGGGCGCTGGTTAGCACCAATGGGTTGTTGATCACCGGCGGGCAGTTTGTCTCTTACCTCGTTAATCTGGCGTTCACTCAGGTTCC TGGAACTTGGAGATGGATGCTTGGAGTAGCAGGGGTTCCAGCTCTGGTTCAGTTCTTGTTGATGTGGTCGCTCCCTGAATCTCCACGATGGCTTTACAGA GAGAACCATGAAGAAGAAGCTCGTGCGATCCTGGAAAAGATATACCCACCTGAGGAAGTAGAAACGGAAATCGAAGCGCTGAAAGAGTCCGTTGAAAGCG AAAAGGCAATGGAGGAATTAACCGGAAAGGAAATGATCTCCAAACTCAAGGGTGCACTCACAGACCCTGTCGTACGCCGTGGACTCTACGCCGGCGTGAC AGTCCAAGTCGCTCAACAGTTCGTCGGAATGAACACCGTGATGTACTACGCTCCAACCATCGTCCAGTTCGCAGGATTTGCTTCGAATTCGGTGGCTCTG GCCCTCTCGCTGGTGACGTCTGGGCTCAATGCGGTCGGTTCGATCGTCAGCATGATGTTCGTCGACAAGTATGGCAGGCGCCGGCTGATGATGATCTCCA TGGTAGGGATCATACTGCTTTTAGTTGCTCTGGGGGCGGTTTTCCAGCAAGCGTCAGTTCACGCGCCGGCGGTGAGTGGGATCGAGAGTGACCGTTTTGG CGGCGGGAATCTGACGTGTCCTGCTTTCGTGGACAATCTGAGTAAGCCGAAATTTGGATGCATGCACTGCTTGAAAGCTCAGTGTGCATTCTGCTCCAAT GCTGCTAGCCAGTACAACCCAGGAGCATGTTTGGTGTCCGACAAGACAGTAAGAGGAATCTGCCTATCCGAAAAGCGAGTATGGTACTCGGAAGGCTGTC CGAGCAGGATCGGGTTTCTGGCGGTGATTCTTCTTGCACTGTACATCATTTCCTACTCTCCCGGAATGGGGACAGCTCCGTGGATCGTCAACTCCGAGAT CTATCCGCTCCGGTACAGAGGGATCGGAGGAGGAATCGCTGCCATGGCGAACTGGACGTCGAATCTGGTTGTCAGCTTGACGTTTCTGACGATGACCGAG ACTCTGACGGTGGCAGGCGCTTTCCTGATGTTTGCTGGGATTTCGTTGCTGGGTTTGATGGCTATATTCTTCTTGGTTCCTGAACCAAAGGGTTGCAGTT TGAGGAGGTGGAGAAGATGCTGA
AA sequence Show only first row Show all	>Lus10017559 pacid=23163095 polypeptide=Lus10017559 locus=Lus10017559.g ID=Lus10017559.BGIv1.0 annot-version=v1.0 MLASHLQEPLHRQTSILRRNRRPPVRIRHGVISGALLYIKDEFYSVNNSTFLQEVIVSTCVAGAIVGAAVGGHANDRFGRRKTIMAADALFFLGAVVMAA APFPGVIIAGRVLVGLGVGMASMTAPLYISEASPAKIRGALVSTNGLLITGGQFVSYLVNLAFTQVPGTWRWMLGVAGVPALVQFLLMWSLPESPRWLYR ENHEEEARAILEKIYPPEEVETEIEALKESVESEKAMEELTGKEMISKLKGALTDPVVRRGLYAGVTVQVAQQFVGMNTVMYYAPTIVQFAGFASNSVAL ALSLVTSGLNAVGSIVSMMFVDKYGRRRLMMISMVGIILLLVALGAVFQQASVHAPAVSGIESDRFGGGNLTCPAFVDNLSKPKFGCMHCLKAQCAFCSN AASQYNPGACLVSDKTVRGICLSEKRVWYSEGCPSRIGFLAVILLALYIISYSPGMGTAPWIVNSEIYPLRYRGIGGGIAAMANWTSNLVVSLTFLTMTE TLTVAGAFLMFAGISLLGLMAIFFLVPEPKGCSLRRWRRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35740		ATINT3	nositol transporter 3 (.1)		Lus10017559 [exp]	0	1
					Lus10016134 [exp]	1.4	0.9239
AT3G54200			Late embryogenesis abundant (L...		Lus10031555 [exp]	1.4	0.9338
					Lus10024445 [exp]	2.4	0.9135
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10027870 [exp]	4.5	0.8695
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10040166 [exp]	5.3	0.8950
AT2G43610			Chitinase family protein (.1)		Lus10003586 [exp]	6.3	0.8986
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	8.2	0.8998
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	11.0	0.8827
					Lus10021726 [exp]	17.3	0.8396
					Lus10035048 [exp]	18.8	0.8958

Compare expression of checked genes

Lus10017559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.