Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 281 / 2e-91 ATINT4 inositol transporter 4 (.1) AT2G35740 270 / 7e-87 ATINT3 nositol transporter 3 (.1) AT1G30220 214 / 2e-65 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 134 / 4e-36 ATINT1 inositol transporter 1 (.1) AT5G26250 91 / 1e-20 Major facilitator superfamily protein (.1) AT3G05960 84 / 3e-18 ATSTP6 sugar transporter 6 (.1) AT3G19940 74 / 9e-15 Major facilitator superfamily protein (.1) AT2G20780 74 / 1e-14 AtPLT4 Major facilitator superfamily protein (.1) AT1G50310 73 / 2e-14 ATSTP9 sugar transporter 9 (.1) AT1G07340 73 / 2e-14 ATSTP2 sugar transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010501 [exp] 438 / 2e-152 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 400 / 2e-137 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 400 / 2e-137 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 326 / 6e-109 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10017561 [exp] 284 / 4e-92 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 277 / 1e-89 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10028118 [exp] 210 / 9e-64 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 210 / 9e-64 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10025565 [exp] 135 / 2e-36 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015300 [exp] 312 / 3e-103 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 292 / 2e-95 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 272 / 8e-88 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 138 / 1e-37 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 129 / 5e-34 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133420 [exp] 96 / 7e-24 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133340 [exp] 90 / 4e-21 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.017G032600 [exp] 85 / 1e-19 AT2G43330 0 / 1 inositol transporter 1 (.1) Potri.013G135200 [exp] 82 / 2e-17 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.007G027900 [exp] 76 / 2e-15 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10017560 pacid=23163128 polypeptide=Lus10017560 locus=Lus10017560.g ID=Lus10017560.BGIv1.0 annot-version=v1.0 ATGAAGTTGTCGTTCACAGCTGGCATCGCCGGCCTCCTTTTCGGCTATGACACTGGGATACCTGCTGTGGTTCAGTTCTTCTTGATGTGGTCACTCACTG AGTCCCCTAGATGGCTTTACAGAGAGAACTATGTCCTCGAGGCCAAGGAGATCCTCGAAAAGTTGTACCCAGAAGAAGAAGTCGACAGAGAGATCCAATC GTTGCGAGAGTCGGGGGGAAATGAGAAGGCAATCGAGGAATCAATAGGGAAAGACATGTTCTCCAAGCTCAAAGGTGCATTCTCCAACACTGTCGTCCGG CGAGGACTGTATGCGGGCGTGACAGTCCAAGTGGCCCAACAATTCGTGGGGATCAACACAGTGATGTACTACTCCCCTACCATCGTCCAGTTCTCAGGGT TTGCCTCGAAATCGATAGCCCTAGCGCTCTCGTTGATCACCTCAGGGCTCAATGCCGTCGGATCGTTCATCAGCATGATGGTGGTGGACAAGTATGGACG AAGGAGGTTAATCATGATCTCGATGGTCGGGATTATCGTGTGTCTTATAGTTTTGGCGGCTGTTTTCCGGCAGGCTTCGCGTGATGCCCCGGGGATTGAT TCCGAGGATACTAAGCAATGTGGGATGAATGTGACTTGTTCGAGTTACTTGGAGAACTTGCATAAGCCTAAGTGGGGTGGTATGCAATGCTTGAAGGCTG AATGTTCCTTCTGTTCCAACCCACTCAACAAGGTTCTACCAACAGGACAAGCCAGGAGCATATCTGATCGCCGACAAGTCAGCCAGAGCACTACGAAGAA GGCTGTCCGAGCAAGATCGGATTCCTCACCGTCATAA
AA sequence Show only first row Show all	>Lus10017560 pacid=23163128 polypeptide=Lus10017560 locus=Lus10017560.g ID=Lus10017560.BGIv1.0 annot-version=v1.0 MKLSFTAGIAGLLFGYDTGIPAVVQFFLMWSLTESPRWLYRENYVLEAKEILEKLYPEEEVDREIQSLRESGGNEKAIEESIGKDMFSKLKGAFSNTVVR RGLYAGVTVQVAQQFVGINTVMYYSPTIVQFSGFASKSIALALSLITSGLNAVGSFISMMVVDKYGRRRLIMISMVGIIVCLIVLAAVFRQASRDAPGID SEDTKQCGMNVTCSSYLENLHKPKWGGMQCLKAECSFCSNPLNKVLPTGQARSISDRRQVSQSTTKKAVRARSDSSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10017560 [exp]	0	1

Compare expression of checked genes

Lus10017560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.