Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16480 765 / 0 ATINT4 inositol transporter 4 (.1) AT2G35740 702 / 0 ATINT3 nositol transporter 3 (.1) AT1G30220 636 / 0 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G43330 334 / 3e-108 ATINT1 inositol transporter 1 (.1) AT2G20780 159 / 4e-42 AtPLT4 Major facilitator superfamily protein (.1) AT4G36670 152 / 5e-40 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 145 / 2e-37 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G16120 145 / 2e-37 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT1G07340 143 / 8e-37 ATSTP2 sugar transporter 2 (.1) AT3G18830 142 / 3e-36 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010500 [exp] 1007 / 0 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 734 / 0 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 720 / 0 AT4G16480 755 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 711 / 0 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10017559 [exp] 657 / 0 AT2G35740 669 / 0.0 nositol transporter 3 (.1) Lus10028118 [exp] 630 / 0 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 629 / 0 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10025565 [exp] 347 / 3e-113 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 335 / 2e-108 AT2G43330 769 / 0.0 inositol transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010600 [exp] 843 / 0 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 823 / 0 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 786 / 0 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.007G126800 [exp] 348 / 1e-113 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.017G032200 [exp] 335 / 1e-108 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.004G133340 [exp] 234 / 6e-73 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.004G133420 [exp] 231 / 3e-72 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G158700 [exp] 168 / 9e-46 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G039100 [exp] 167 / 5e-45 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 166 / 1e-44 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10017561 pacid=23163187 polypeptide=Lus10017561 locus=Lus10017561.g ID=Lus10017561.BGIv1.0 annot-version=v1.0 ATGGCAGAAGGAGGAATAGTGAAGCCAGACAAGACAGAATTCACAGAGCTATGGAGGACAGTTTGGAAGTATCCTTACATTATGAGGCTGGCTCTTTCAG CCGGAATCGGAGGCCTCCTCTTCGGTTACGACACAGGAGTCATCTCGGGTGCCCTTCTGTACATTCGCGAGGACTTTGAATCGGTCAATAAGAAGACATG GCTGCAGGAAACCATTGTGAGCATGGCAGTAGCAGGAGCCATAGTCGGAGCAGCAATCGGAGGGTTCCTGAGCGATAGCTTGGGGAGGAAGAAATCGATC TTGGGAGCCGATATCGTGTTCTTCGTAGGTGCAATAGTCATGGCTGCAGCTCCGGCACCATGGGTGATAGTAGTTGGGAGACTCCTTATTGGGTTAGGAG TCGGAATGGCTTCCATGACGGCTCCTCTGTACATCTCTGAGGCTTCTCCTGCTCGAATCCGCGGTGCCCTAGTTAGCACCAATGGGTTGCTCATCACTGG TGGACAGTTTCTATCTTACTGCATCAATCTAGCTTTCACCAAGGCTCCCGGTACGTGGCGTTGGATGCTCGGAGTAGCTGGTCTTCCGGCTTTGGTTCAG TTCGGGTTGATGGTCTTCCTCCCCGAGTCTCCCCGATGGCTTTACAGCAGGAACAAAGTGGATGAAGCGAGGGAGATCCTTGAGAAGATCTACCCACCGG AAGAAGTGGAAGCAGAGATGGCAGCATTGAAAGAGTCGGTCGAATCCGAAAGGGAGGACGAAGCCGTAATCGGAGAAAACTTGTCATCCAAGTTAAAGAA CGTGTTCAAGAACCCTGTGGTTAGAAGAGGGCTTTATGCAGGAATAACAGTCCAAGTAGCTCAGCAGTTTGTTGGGATCAACACAGTAATGTACTACGCA CCGACGATTGTCCAATTCGCGGGATTCGCTTCGAATTCTGTCGCCCTGGCGCTCTCTCTAATCACCGCCGGACTCAATGCATTAGGTTCGGTGATTAGTA TGATGTTCGTAGACCGATATGGAAGGAAGAGGCTAATGATAATATCGATGATCGGCATCATATTCTTCCTCGTCGCCCTGTCTGTCGTGTTCATGGAAGC TTCCTCCCACGCTCCCAAAATCAGCTCGGTAGAGTCCTCCCATTTCGGAGCTAACTCCACCTGCTCAGCATTCGCGAAATCTTCTTCGAATCGATGGAGC TGCATGACTTGCTTGAAGGCCAAGTGCGGATTCTGCTCGAACAAGGCCAACGAGTACCACCCGGGAGCTTGCTTGGCAGACACGAAACAGATTAAAAACG AATGTTTGTCGGAAGGTCGGGTGTATTTCGAGCAAGGGTGTCCGAGCAAATTTGGCATACTGGCAGTGGTCCTCTTGGGACTCTACATCATCTCGTACTC GCCCGGAATGGGGACCGCGCCATGGATAGTAAACTCAGAGATCTATCCGCTGAGGTACAGAGGGATCTGCGGAGGGATTGCAGCAGTGGCCAATTGGGTT TCGAATTTGATAGTGAGCGAATCTTACTTGACGCTCACGGAACATCTGGGAGCCGGTGGGACATTCTTGTTGTTTGCAGGAGTTTCGACTGTTTCGTTGT GTTTCATCTTCTGGTTTGTGCCCGAGACGAAAGGTCTGCAGTTTGAGGAGGTTGAGAAGATGCTTGCTGATGGGTATAGCCCTTGTGGTGACAGAGGAAA GAAGAAGAAGAACAACAACAAGGGTGTTAATGATGAACTAACAGCATAA
AA sequence Show only first row Show all	>Lus10017561 pacid=23163187 polypeptide=Lus10017561 locus=Lus10017561.g ID=Lus10017561.BGIv1.0 annot-version=v1.0 MAEGGIVKPDKTEFTELWRTVWKYPYIMRLALSAGIGGLLFGYDTGVISGALLYIREDFESVNKKTWLQETIVSMAVAGAIVGAAIGGFLSDSLGRKKSI LGADIVFFVGAIVMAAAPAPWVIVVGRLLIGLGVGMASMTAPLYISEASPARIRGALVSTNGLLITGGQFLSYCINLAFTKAPGTWRWMLGVAGLPALVQ FGLMVFLPESPRWLYSRNKVDEAREILEKIYPPEEVEAEMAALKESVESEREDEAVIGENLSSKLKNVFKNPVVRRGLYAGITVQVAQQFVGINTVMYYA PTIVQFAGFASNSVALALSLITAGLNALGSVISMMFVDRYGRKRLMIISMIGIIFFLVALSVVFMEASSHAPKISSVESSHFGANSTCSAFAKSSSNRWS CMTCLKAKCGFCSNKANEYHPGACLADTKQIKNECLSEGRVYFEQGCPSKFGILAVVLLGLYIISYSPGMGTAPWIVNSEIYPLRYRGICGGIAAVANWV SNLIVSESYLTLTEHLGAGGTFLLFAGVSTVSLCFIFWFVPETKGLQFEEVEKMLADGYSPCGDRGKKKKNNNKGVNDELTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10017561 [exp]	0	1
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10005036 [exp]	1.0	0.8483
					Lus10043270 [exp]	21.3	0.7930
AT1G15320			unknown protein		Lus10025746 [exp]	28.0	0.7642
AT3G48660			Protein of unknown function (D...		Lus10041549 [exp]	28.3	0.7774
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10001203 [exp]	44.2	0.7681
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	48.8	0.7219
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	49.2	0.7813
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10033801 [exp]	51.4	0.7314
					Lus10007207 [exp]	51.5	0.7515
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	52.1	0.7249

Compare expression of checked genes

Lus10017561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.