Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16490 160 / 2e-46 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010499 [exp] 328 / 3e-111 AT4G16490 608 / 0.0 ARM repeat superfamily protein (.1) Lus10039047 [exp] 120 / 1e-31 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10038812 [exp] 99 / 2e-26 AT4G16490 80 / 2e-18 ARM repeat superfamily protein (.1) Lus10014691 [exp] 96 / 1e-23 AT4G16490 195 / 3e-59 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010800 [exp] 170 / 4e-50 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.006G015100 [exp] 150 / 7e-43 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017563 pacid=23163176 polypeptide=Lus10017563 locus=Lus10017563.g ID=Lus10017563.BGIv1.0 annot-version=v1.0 ATGGTTTCTCTCGACGATTCCCTCTCCCACCACCGCCGCCACCACCATCTCTCCAATTCTTCCCGCTTCCCTCTCCCGCGGAATGGCGTCGCCGGCACCC ATGTCTTCTACGACCTCCGCTCTCCCTCCTCCTCCACCTCCAACATCAGCCGCTTGACACCCGGCCGCTCCATGCGCACTATTCGCTCCAACCTCTACGG ACAGCACACCGACGATGACGATGACAACAACAGCTGCTCTTCCTTCGTCTCCGCCGTCGATGCTACTCCTAACCGTTCTTCTTCTTCTTCTCCATTCGTC TCCGAGAATTTGACCGACTCCGTCATGGACATGCGCCTCGGGGAGCTGGCCGCGAGGAGCTACGGCAACGGCTCGGGAAAATCGGATAAGTCAGGTACGG AATCTTTCTCCGGGGAGGATTATCTCAATATCTCTCAGGCGTTCAGTGATTTCTCCGGGTGTAGTAGCGATATATCGGGCGAATTGCAGCGGTTGGCGTG CTTGCCTTCTCCTAGGCATGGAGATGGCGAATCGGCGGCGGAGAGGGAGCCGGAGATTGAGCCGGAGCCCTGCCTAGGGTTTCTGCAGAGGGAGAGTTTC TCTACGGAGATAATTGATAGTATTTCTCCAGAGGATCTCCAGCCGACGGTCAAGATCTGCGTGGACGGACTGAAGTCGAGTTCAGTTGCGGTCTGA
AA sequence Show only first row Show all	>Lus10017563 pacid=23163176 polypeptide=Lus10017563 locus=Lus10017563.g ID=Lus10017563.BGIv1.0 annot-version=v1.0 MVSLDDSLSHHRRHHHLSNSSRFPLPRNGVAGTHVFYDLRSPSSSTSNISRLTPGRSMRTIRSNLYGQHTDDDDDNNSCSSFVSAVDATPNRSSSSSPFV SENLTDSVMDMRLGELAARSYGNGSGKSDKSGTESFSGEDYLNISQAFSDFSGCSSDISGELQRLACLPSPRHGDGESAAEREPEIEPEPCLGFLQRESF STEIIDSISPEDLQPTVKICVDGLKSSSVAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16490			ARM repeat superfamily protein...		Lus10017563 [exp]	0	1
AT4G16490			ARM repeat superfamily protein...		Lus10017562 [exp]	1.0	0.9702
AT4G16490			ARM repeat superfamily protein...		Lus10010499 [exp]	1.4	0.9433
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	2.4	0.9402
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	3.9	0.9271
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	4.5	0.9373
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031686 [exp]	5.5	0.9236
AT4G02440		EID1	EMPFINDLICHER IM DUNKELROTEN L...		Lus10030373 [exp]	5.5	0.9106
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	6.2	0.8525
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031105 [exp]	7.5	0.8999
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Lus10032504 [exp]	8.0	0.9164

Compare expression of checked genes

Lus10017563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.