Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47530 380 / 3e-130 Auxin-responsive family protein (.1) AT4G17280 374 / 8e-128 Auxin-responsive family protein (.1) AT5G35735 343 / 1e-115 Auxin-responsive family protein (.1) AT3G25290 320 / 1e-106 Auxin-responsive family protein (.1.2) AT4G12980 305 / 8e-101 Auxin-responsive family protein (.1) AT3G59070 274 / 5e-88 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 199 / 8e-60 Auxin-responsive family protein (.1) AT5G48750 179 / 1e-53 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 126 / 1e-32 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 106 / 3e-25 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010498 [exp] 673 / 0 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10012350 [exp] 356 / 7e-121 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10002274 [exp] 354 / 4e-120 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 354 / 5e-120 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10025877 [exp] 245 / 1e-78 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10006398 [exp] 241 / 2e-77 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10038225 [exp] 215 / 6e-68 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10001736 [exp] 218 / 5e-67 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1) Lus10001162 [exp] 217 / 1e-66 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G010900 [exp] 447 / 1e-156 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 445 / 6e-156 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 444 / 2e-155 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 422 / 6e-147 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 338 / 5e-114 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.014G162000 [exp] 336 / 6e-113 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 302 / 1e-99 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.019G095800 [exp] 291 / 1e-95 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.001G031600 [exp] 287 / 8e-94 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 284 / 8e-93 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10017564 pacid=23163202 polypeptide=Lus10017564 locus=Lus10017564.g ID=Lus10017564.BGIv1.0 annot-version=v1.0 ATGGCTACACCACCAAACTCCGCACTTCCCCCCTTTCTCCTTCTTCTCCTCCTCCTCTGCATCAACTCTGCAACTTCCTCTGTTTCCTCCACCAAATGCT CAACCTACACTTTCCCAGACAACAAAACCACCTTCCCATCCTGCATAGACCTCCCATACCTCAACTCCTTCCTCCACTGGGACTACGACCCCTCCACCGG AATCCTCCGAATCGCCTACCGCCACGATTCCATCGCTTCCCCTGCCTCGACATGGGTGGCCTGGGCCATCAACCCGGCCTCTCCTGCCATGATCGGCTCC CAGGCTCTCGTAGCTTTCCATCGCCCCAGCGATGGAAAGCTGACGGCCTACACTGCCCCGATCAACGATTACTCCACGTCGTTGACCGAGGCTAAGCTCA GCATCGACGTTAGGGATGTGGGGGCCACGTACTCGGACAGTGAGATCACCATCTTCGGGTATATCCGGCTCAACGAGAATACCTCAACGTTGAACCATGT CTGGCAGGATGGACCGGTCTCCCCCGATGGACCGGTCCAGCATTCGACGAATGGGGATAATGTTAAGTCTGCTGGGAGCTTGAATCTCTTGTCTGGAGCT TCTGGGATTGCTGGCGGAGGAAGTGATCGGATCAAGAAGCGAAATATTCATGGGGTGATAAATGCAGTAAGCTGGGGAATCCTGATGCCACTAGGAGCAT TAACAGCAAGATACCTGAAAGTGTTCAGATCAGCAGGTCCAGCTTGGTTCTATCTCCACGTTAGCTGCCAATCTGCAGCCTACATCGTCGGGATAGCAGG CTGGATCACCGGGCTCCAACTTGGTGGCCAGTCCCCGAGCATCGTCTACACAGCACACAGGATGATCGGGATCGTCCTCTTCTGCCTTGGAGCCCTTCAG GTGGTTGCCTTACTCCTGAGGCCAAAGACAGATCACAAGTACAGATTTCACTGGAACGTGTACCACCATTCGGTAGGGTATGCTGTGATAACCTTGAGTG TGATCAACATCTTCAAAGGGCTGGAGATTCTGCAGCCTGACAAGAAGTGGAAGAACGGTTATATCGGTGTTATTGCTGCGCTGGGCTTCAGCGCTGTGTG GCTCGAAGCCTCCACATGGTACGTTACTGTGAAGAGGAGAATGTCGGAGACCAATGGTGGTGATGGCGATAAGAAGGTTCCCCAGGAGCCACACAGTAGT AGCTATGGAGCTTAA
AA sequence Show only first row Show all	>Lus10017564 pacid=23163202 polypeptide=Lus10017564 locus=Lus10017564.g ID=Lus10017564.BGIv1.0 annot-version=v1.0 MATPPNSALPPFLLLLLLLCINSATSSVSSTKCSTYTFPDNKTTFPSCIDLPYLNSFLHWDYDPSTGILRIAYRHDSIASPASTWVAWAINPASPAMIGS QALVAFHRPSDGKLTAYTAPINDYSTSLTEAKLSIDVRDVGATYSDSEITIFGYIRLNENTSTLNHVWQDGPVSPDGPVQHSTNGDNVKSAGSLNLLSGA SGIAGGGSDRIKKRNIHGVINAVSWGILMPLGALTARYLKVFRSAGPAWFYLHVSCQSAAYIVGIAGWITGLQLGGQSPSIVYTAHRMIGIVLFCLGALQ VVALLLRPKTDHKYRFHWNVYHHSVGYAVITLSVINIFKGLEILQPDKKWKNGYIGVIAALGFSAVWLEASTWYVTVKRRMSETNGGDGDKKVPQEPHSS SYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47530			Auxin-responsive family protei...		Lus10017564 [exp]	0	1
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	14.5	0.8714
					Lus10003161 [exp]	15.5	0.8786
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	16.2	0.8354
					Lus10031407 [exp]	17.3	0.8793
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	23.0	0.8354
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10035271 [exp]	23.9	0.8820
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10003902 [exp]	27.0	0.8755
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	29.0	0.8522
AT3G17152			Plant invertase/pectin methyle...		Lus10037793 [exp]	39.9	0.8770
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	48.0	0.8748

Compare expression of checked genes

Lus10017564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.