Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47540 592 / 0 Mo25 family protein (.1) AT4G17270 550 / 0 Mo25 family protein (.1) AT2G03410 457 / 2e-162 Mo25 family protein (.1) AT5G18940 270 / 2e-88 Mo25 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010497 [exp] 702 / 0 AT5G47540 594 / 0.0 Mo25 family protein (.1) Lus10027342 [exp] 656 / 0 AT5G47540 592 / 0.0 Mo25 family protein (.1) Lus10039045 [exp] 570 / 0 AT5G47540 517 / 0.0 Mo25 family protein (.1) Lus10041405 [exp] 444 / 3e-156 AT5G47540 446 / 3e-157 Mo25 family protein (.1) Lus10036523 [exp] 437 / 2e-153 AT5G47540 446 / 1e-156 Mo25 family protein (.1) Lus10034014 [exp] 251 / 3e-81 AT5G18940 522 / 0.0 Mo25 family protein (.1.2) Lus10012762 [exp] 236 / 4e-75 AT5G18940 512 / 0.0 Mo25 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G011100 [exp] 592 / 0 AT5G47540 589 / 0.0 Mo25 family protein (.1) Potri.010G155400 [exp] 590 / 0 AT5G47540 588 / 0.0 Mo25 family protein (.1) Potri.006G014800 [exp] 587 / 0 AT5G47540 569 / 0.0 Mo25 family protein (.1) Potri.002G222800 [exp] 477 / 3e-170 AT5G47540 458 / 1e-162 Mo25 family protein (.1) Potri.014G162100 [exp] 478 / 2e-169 AT5G47540 461 / 1e-162 Mo25 family protein (.1) Potri.019G057100 [exp] 440 / 2e-155 AT5G47540 411 / 5e-144 Mo25 family protein (.1) Potri.010G155300 [exp] 338 / 6e-117 AT5G47540 348 / 6e-121 Mo25 family protein (.1) Potri.010G028700 [exp] 263 / 8e-86 AT5G18940 469 / 5e-167 Mo25 family protein (.1.2) Potri.016G011300 [exp] 252 / 2e-84 AT5G47540 262 / 1e-88 Mo25 family protein (.1) Potri.008G198900 [exp] 253 / 4e-82 AT5G18940 436 / 5e-154 Mo25 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08569 [flax] [poplar] Mo25 Mo25-like
Representative CDS sequence Show only first row Show all	>Lus10017565 pacid=23163167 polypeptide=Lus10017565 locus=Lus10017565.g ID=Lus10017565.BGIv1.0 annot-version=v1.0 ATGAAGGGGCTTTTCAAGAACAAGCCTCGTACCCCTGCCGACATCGTCCGGCAGACTCGCGATCTCCTTATGTTTGTTGATCGCTCGTCTTCCACTTACT CCGCCGATTTGCGCGAAGGTAGGCGCGAAGAGAAGATGGTGGAGTTATCTAAAAACATTAGGGAAATGAAGTCGATTCTTTATGGCGATAGCGAGGCAGA ACCTGTCGCCGAAGCTTGTGCACAGCTAACTCAAGAGTTCTTCAAAGAGAACTCGCTCCGCCTTTTCATTGTTTGCCTTCCAAAGTTGAGTTTGGAGACC CGGAAAGATGCTACTCAAGTTGTTGCTAATTTACAGAGGCAACAAGTTCAGTCTCGTCTGATTGCTTCTGATTATTTGGAAAACAATACTGATCTTCTCG ATATTCTGATGGCTGGTTATGGGATCCCGGACATGGCGTTACATTATGGTGCGATGTTGAGGGAGTGCATACGTCATCAGACTGTTGCGAGATACGTCTT GGAGTCGGAAGAAATGAAAAGATTCTTTGATTATATTCAGCTGCCCAATTTCGATATTGCTGCTGATGCTGCTGCAACTTTCAAGGAACTCCTAACAAGG CATAAATCTACCGTATCTGAATTCTTATCGAAGAACTATGACTGGTTCTTTGCAGAATACAACTCAAAGTTGCTGGAATCTGCTAACTATATAACGAGAC GGCAGGCTGTCAAGTTACTGGGTGATATATTACTGGACCGATCAAACTCCGGTGTAATGACGCGATATGTGAGCTCGAGGGATAACCTGAGGATACTTAT GAATTTGCTTAGGGAATCAAGCAAAAGCATCCAGATAGAAGCATTTCATGTTTTCAAGCTCTTTGCAGCGAATCAAAACAAACCTGCAGACATCGTGAGC ATACTCGTGGCTAACAGAAGCAAGCTTCTTCGACTGTTTGCTGATTTCAAGACGGAGAAAGAGGATGAGCAATTCGAGGCGGACAAAGCTCAGGTGGTGA GAGAAATAGCTGCCCTCGAGCCGAAAGCATGA
AA sequence Show only first row Show all	>Lus10017565 pacid=23163167 polypeptide=Lus10017565 locus=Lus10017565.g ID=Lus10017565.BGIv1.0 annot-version=v1.0 MKGLFKNKPRTPADIVRQTRDLLMFVDRSSSTYSADLREGRREEKMVELSKNIREMKSILYGDSEAEPVAEACAQLTQEFFKENSLRLFIVCLPKLSLET RKDATQVVANLQRQQVQSRLIASDYLENNTDLLDILMAGYGIPDMALHYGAMLRECIRHQTVARYVLESEEMKRFFDYIQLPNFDIAADAAATFKELLTR HKSTVSEFLSKNYDWFFAEYNSKLLESANYITRRQAVKLLGDILLDRSNSGVMTRYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVS ILVANRSKLLRLFADFKTEKEDEQFEADKAQVVREIAALEPKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	0	1
AT1G60940		SNRK2-10, SNRK2...	SNF1-RELATED KINASE 2B, SUCROS...		Lus10001367 [exp]	2.0	0.9067
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10009553 [exp]	3.5	0.8655
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	5.2	0.8792
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	6.9	0.8625
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	7.4	0.8693
AT5G42000			ORMDL family protein (.1.2)		Lus10017314 [exp]	8.2	0.8109
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	9.0	0.8418
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10003047 [exp]	9.4	0.8589
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	9.8	0.8843
AT4G36660			Protein of unknown function (D...		Lus10010810 [exp]	10.5	0.8468

Compare expression of checked genes

Lus10017565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.