Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24280 1115 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 1109 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G09590 644 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 620 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT5G28540 526 / 6e-179 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 525 / 2e-178 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 512 / 6e-174 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G02500 511 / 1e-173 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G12580 508 / 2e-172 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G56410 499 / 3e-169 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010496 [exp] 1219 / 0 AT4G24280 1120 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10039044 [exp] 1194 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10037357 [exp] 1164 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10035781 [exp] 1156 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 1014 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10009039 [exp] 659 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 656 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10041999 [exp] 651 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 620 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G006300 [exp] 1153 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 1142 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.009G079700 [exp] 659 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 563 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G087500 [exp] 532 / 0 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.003G143600 [exp] 532 / 0 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 521 / 3e-177 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 518 / 5e-176 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 516 / 2e-175 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 512 / 7e-174 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10017566 pacid=23163144 polypeptide=Lus10017566 locus=Lus10017566.g ID=Lus10017566.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAGCTGCCCAGATTCATGTCCTCGGAGCCATGGGGTTCAGCAGCTCCTCATCGAAGAAACCCACCTTCTCTTTCGCCCCCAAGGCGGCGT TCTTGAGATACAACGGCGGAGCCCGGAGGAGGAGCTACGGTCCGTTGAGGGTGGCCTGTGAGAAAGTGGTGGGGATTGACCTTGGGACGACGAATTCTGC TGTGGCGGCCATGGAAGGTGGGAAGCCGACGATTGTGACCAACGCTGAAGGTCAACGGACGACTCCCTCGGTGGTGGCGTACACGAAGAACGGGGATAGG CTTGTGGGTCAGATTGCCAAGAGGCAAGGGGTTGTGAACCCTGAGAATACTTTCTTCTCCGTGAAGAGATTTATTGGGAGGAAGATGTTGGAGGTTGATG AGGAGTCCAAGCAGGTCTCTTATAAGGTGGTTAGGGATGATAATGGGAACGTGAAGTTGGATTGTCCTGTTTTGGGGAAGCAGTTTGCTGCTGAAGAGAT TTCAGCTCAGGTTCTGAGAAAGCTAGTGGATGATGCTTCGAAGTTTCTGAACGATAAAGTGACGAAAGCTGTTGTCACAGTCCCTGCTTACTTCAACGAC TCTCAGAGGACAGCTACAAAGGATGCTGGTCGAATTGCAGGGCTCGAAGTCCTCCGTATCATCAACGAGCCTACTGCTGCTTCGTTGGCTTACGGTTTCG AGAAGAAGAATAACGAGACCATCCTAGTGTTCGACCTCGGTGGTGGTACTTTTGATGTTTCAGTTCTTGAGGTTGGTGATGGAGTTTTTGAAGTGCTGTC CACTTCCGGAGACACACACTTGGGAGGTGATGATTTCGACAAGAGAATTGTTGACTGGCTTGCTGCTGACTTTAAAAGGGATGAAGGTATTGACCTTTTG AAGGACAAACAAGCTCTGCAACGGCTAACTGAGACAGCCGAGAAGGCCAAAATGGAGCTCTCATCTTTGACTCAAGCTAACATCAGTTTGCCATTCATCA CCGCCACTGCTGAAGGTCCTAAGCATATCGAGACGACCCTTACCAGGGTCAAGTTCGAGGAGCTGTGCTCTGATCTGCTCGATAGGCTGAAAACCCCGGT TGAGAATTCGCTGAGGGACGCCAAACTCAGCTTTAAAGACCTTGACGAGGTCATTCTCGTCGGTGGATCGACACGTATCCCTTCCGTTCAAGAGCTCGTG AAGAAGCTGACAGGGAAGGACCCTAACCTCACTGTGAATCCTGATGAAGTTGTGGCTCCCGGCGCTGCGGGTCACGCTGTGAACCCTAGCGAAGTTGTGG CTCTCGGTGCTGCGGTCCAGGCTGGCGTTCTCTCCGGCGATGTCAGCGACATCGTGCTCTTGGATGTCACTCCGTTATCGATCGGTTTGGAGACTCTCGG GGGAGTAATGACCAAGATCATTCCGAGGAACACCACACTTCCCACCTCCAAATCGGAGGTGTTCTCGACGGCTGCAGATGGGCAAACGAGCGTCGAGATC AACGTTCTTCAAGGTGAAAGAGAGTTTGTAAGAGACAACAAGTCTCTAGGAAGCTTCCGCTTGGATGGTATCCCGCCAGCACCGCGTGGGGTTCCTCAGA TTGAAGTCAAATTTGACATTGATGCCAATGGCATCCTCTCCGTCACCGCCAGTGACAAGGGCACTGGCAAGAAGCAAGACATTACGATCACCGGTGCCAG CACTCTGCCTAGTGACGAGGTCGAGAGGATGGTCCAAGAAGCGGAGAGATTCGCAAAGGAGGACAAGGAGAGTAGAGACGCGATCGACACGAAGAACCAG TCGGATTCTGTGGTGTATCAGACCGAGAAGCAGCTGAAGGAGCTTGGAGATAAGGTTCCGGCTCCGGTCAAAGAGAAGGTGGAATCGAAGCTCCAGGAGC TGAGGGATGCCATTGCTGGGGGATCAACTCAAGCGATGAAAGATGCTATGACGGAACTGAACCAAGAAGTTATGCAACTTGGGCAGTCCCTTTACAACCA ACAAGGCGGTTCGGCTGCACCAGGTGATGGTCCAACTCCTCCTCCGGGGAATGAGTCTGGATCGGATTCTTCGAGCAAAGGACCTGATGGAGATGTCATT GACGCGGATTTCACAGACAGCAAGTGA
AA sequence Show only first row Show all	>Lus10017566 pacid=23163144 polypeptide=Lus10017566 locus=Lus10017566.g ID=Lus10017566.BGIv1.0 annot-version=v1.0 MASSAAQIHVLGAMGFSSSSSKKPTFSFAPKAAFLRYNGGARRRSYGPLRVACEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR LVGQIAKRQGVVNPENTFFSVKRFIGRKMLEVDEESKQVSYKVVRDDNGNVKLDCPVLGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFND SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAADFKRDEGIDLL KDKQALQRLTETAEKAKMELSSLTQANISLPFITATAEGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPSVQELV KKLTGKDPNLTVNPDEVVAPGAAGHAVNPSEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEI NVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTASDKGTGKKQDITITGASTLPSDEVERMVQEAERFAKEDKESRDAIDTKNQ SDSVVYQTEKQLKELGDKVPAPVKEKVESKLQELRDAIAGGSTQAMKDAMTELNQEVMQLGQSLYNQQGGSAAPGDGPTPPPGNESGSDSSSKGPDGDVI DADFTDSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10017566 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10006962 [exp]	13.2	0.8046
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	17.3	0.7784
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	17.9	0.7650
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10004696 [exp]	18.1	0.7662
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10001845 [exp]	20.1	0.6870
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10037064 [exp]	23.8	0.7807
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015330 [exp]	25.5	0.7820
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10040262 [exp]	29.3	0.7500
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	38.6	0.7534
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	41.8	0.7760

Compare expression of checked genes

Lus10017566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.