Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47550 69 / 5e-16 Cystatin/monellin superfamily protein (.1) AT4G16500 48 / 3e-08 Cystatin/monellin superfamily protein (.1) AT5G05110 45 / 3e-06 Cystatin/monellin family protein (.1) AT3G12490 40 / 7e-05 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) AT2G40880 38 / 0.0002 ATCYSA, FL3-27 cystatin A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010495 [exp] 222 / 2e-76 AT5G47550 73 / 1e-17 Cystatin/monellin superfamily protein (.1) Lus10034773 [exp] 94 / 4e-26 AT5G47550 65 / 1e-14 Cystatin/monellin superfamily protein (.1) Lus10033311 [exp] 83 / 3e-21 ND 59 / 6e-12 Lus10039104 [exp] 68 / 1e-15 AT5G47550 74 / 4e-18 Cystatin/monellin superfamily protein (.1) Lus10027320 [exp] 51 / 3e-09 AT5G47550 59 / 4e-12 Cystatin/monellin superfamily protein (.1) Lus10026779 [exp] 42 / 7e-06 AT3G12490 129 / 2e-39 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G014500 [exp] 78 / 7e-20 AT5G47550 100 / 9e-29 Cystatin/monellin superfamily protein (.1) Potri.006G014700 [exp] 57 / 2e-11 AT5G47550 62 / 3e-13 Cystatin/monellin superfamily protein (.1) Potri.006G014600 [exp] 53 / 5e-10 AT5G47550 56 / 6e-11 Cystatin/monellin superfamily protein (.1) Potri.001G225800 [exp] 40 / 3e-05 AT3G12490 142 / 4e-44 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.006G033201 [exp] 40 / 8e-05 AT3G12490 251 / 8e-86 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.009G022300 [exp] 39 / 9e-05 AT3G12490 134 / 4e-41 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2) Potri.016G030900 [exp] 38 / 0.0007 AT3G12490 244 / 5e-82 ARABIDOPSIS THALIANA PHYTOCYSTATIN 6, cystatin B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0121 [flax] [poplar] Cystatin PF00031 [flax] [poplar] Cystatin Cystatin domain
Representative CDS sequence Show only first row Show all	>Lus10017567 pacid=23163121 polypeptide=Lus10017567 locus=Lus10017567.g ID=Lus10017567.BGIv1.0 annot-version=v1.0 ATGAAGCTGCAGATCACCTTCCTCACGCTCCTCTTCGCCGTCGGCACGGTAGCAGCCTTGCTCGGCGGGTGGACCGAGATCAAGGACCACACTGCTCCGG ATGTCATAGAGGCGGCGAACTTCGCCGTAGATCAGCACAACACCGAATCCCACACGAAGCTGAAGCTCAAGACCGTGGACAAAGCCGAGTACCAGGTCGT CAACGGGAAGAACTACAGGCTGAGCCTGACCGTCACCGACGACGTCGGCGGCAAGAAGAACGCGATTTCGCAGTACGAGGCGATTGTCTACGTGCCGGCT GGCAGGGGAGGGGTTAAGAAGACGCTGAAATCGTTCGATCCGAAGAAGAAGCATTAA
AA sequence Show only first row Show all	>Lus10017567 pacid=23163121 polypeptide=Lus10017567 locus=Lus10017567.g ID=Lus10017567.BGIv1.0 annot-version=v1.0 MKLQITFLTLLFAVGTVAALLGGWTEIKDHTAPDVIEAANFAVDQHNTESHTKLKLKTVDKAEYQVVNGKNYRLSLTVTDDVGGKKNAISQYEAIVYVPA GRGGVKKTLKSFDPKKKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47550			Cystatin/monellin superfamily ...		Lus10017567 [exp]	0	1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	4.9	0.8851
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	6.7	0.8950
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	11.0	0.8773
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	11.4	0.8522
AT4G38520			Protein phosphatase 2C family ...		Lus10005054 [exp]	12.1	0.8895
AT4G21920			unknown protein		Lus10001143 [exp]	12.7	0.9038
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	14.4	0.9003
AT1G75810			unknown protein		Lus10034536 [exp]	16.9	0.8964
AT2G32190			unknown protein		Lus10039015 [exp]	17.3	0.8985
AT5G15240			Transmembrane amino acid trans...		Lus10005239 [exp]	18.0	0.8334

Compare expression of checked genes

Lus10017567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.