Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66960 1124 / 0 Prolyl oligopeptidase family protein (.1) AT1G69020 500 / 2e-166 Prolyl oligopeptidase family protein (.1) AT1G50380 239 / 2e-68 Prolyl oligopeptidase family protein (.1) AT1G20380 98 / 1e-20 Prolyl oligopeptidase family protein (.1) AT1G76140 96 / 5e-20 Prolyl oligopeptidase family protein (.1.2) AT4G14570 48 / 4e-05 AtAARE, AARE acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004631 [exp] 521 / 1e-174 AT1G69020 830 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10026683 [exp] 490 / 4e-163 AT1G69020 785 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015387 [exp] 255 / 3e-73 AT1G50380 1096 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032920 [exp] 243 / 2e-69 AT1G50380 1018 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10032378 [exp] 240 / 1e-67 AT1G69020 372 / 1e-116 Prolyl oligopeptidase family protein (.1) Lus10026659 [exp] 138 / 8e-38 AT1G69020 156 / 4e-45 Prolyl oligopeptidase family protein (.1) Lus10010494 [exp] 105 / 1e-25 ND 77 / 1e-16 Lus10034558 [exp] 103 / 1e-22 AT1G76140 565 / 0.0 Prolyl oligopeptidase family protein (.1.2) Lus10019994 [exp] 100 / 3e-21 AT1G76140 1008 / 0.0 Prolyl oligopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G035900 [exp] 1190 / 0 AT5G66960 1087 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.010G137801 [exp] 553 / 0 AT1G69020 889 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.007G001300 [exp] 265 / 3e-77 AT1G50380 1149 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G013900 [exp] 102 / 4e-22 AT1G76140 1165 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G014000 [exp] 98 / 6e-21 AT1G76140 1217 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247300 [exp] 94 / 1e-19 AT1G76140 1206 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.005G247400 [exp] 94 / 2e-19 AT1G76140 1210 / 0.0 Prolyl oligopeptidase family protein (.1.2) Potri.002G128700 [exp] 43 / 0.0009 AT5G36210 1049 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF02897 [flax] [poplar] Peptidase_S9_N Prolyl oligopeptidase, N-terminal beta-propeller domain CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10017568 pacid=23163149 polypeptide=Lus10017568 locus=Lus10017568.g ID=Lus10017568.BGIv1.0 annot-version=v1.0 ATGGCAAACCTTCTATCTTCCATCAATCGCCTCCCATCGATAACTCGGTTCCTCCGTCGTTACAGGGCACCTAGGCAGACGAATCCTCCGGTCCCGCCGA AACCCCCAAAGCCGCCGCAAAAGCCGCAAACCTTCACATTCAACGACGCCACCTGGGACGACCCGTACAGCTGGATGTCGAAGCTGAACGACCCCGTGGC GAGGCGGCACATGGACGTGGTGATGGAGCAGGAGGAGAAGTACACGGAGGCAGTCATGTCCAACTCCGAGAAGCTCCAGAGCAAGCTCCAGACTGAAATG GCTTCCAGGATGCAATTTGACCTCTCCACCCCTCCCGTCCGCTGGGGTCCCTGGCTGTATTACCGGAGAGTGGAGGAAGGGAAGCAATACTCAGTGCTTT GCCGGAGATTGGCCAGCTTGAATGAGGAATTCATTTCGAATAAGTCTCCTTTCACGGGATTTGATTTCACTTCTGGAAAGAAGATTGAGCAGAAGCTGCT TGATTACAATCAGGAAGCTGAGAGGTTTGGAGGCTATGCGTACGAGGAGCTATCGGAGATCTCCCCGGACCAGAAGTTTCTTGCATATACAATGTACGAC AAGGACAACGACTATTTCAAGCTATGTGTGAGGAATCTGAACTCTGGTGCATTGTGTAGCAAGCCTCAGGCAGATCGTGTCTGCAATATAGCATGGGCAA AAGGCGGCCAGGCTTTGTTTTATGTTGTCACTGATCAGCACAAGAAGCCTTGCAGGTTATATTGTAGCATGATTGGATCCACGGACGAAGATGTTTTGCT TCTCGATGAACCACACGAGAACGTCCATATCAACATAAGGCATACGAAAGATTTTCACTATGTGTGCGTAAACATTTTCTCGCCAAGTTACTCAAAGGTC TTTCTGGTTAATGCAGCTGATCCCTTTTCTGGAATGAATTTAGTTTGGCAATGTCATTCCCCGGTCCATTGTGTGGTTGAACATCACCAAGGTTACTTGT ATTTATTCACCGACGCTCCTAAAGAAGGCCGATCAGTTGATCATCACTATCTTCTCCGCAGTCATGTTGATACTTCCTCTGGTGCTAGAATATGGGAGAA TGTGTTCCTTGATGATCAAGATATGATAGTTGAGGATGTTGATTTCTGCAACACTCACATGGTACTCATCGTAAGGGAAGGTTGGAGTTTTCGACTCTGT TCGCTCTCTTTACCATTGGCGGGTACGAAGAGTGGACCGGCATATTTGAAGGAGCTTAATCCCACGTACCTTCCTCTTCCAGGACACGTTTCACAAATTT CCCCGGGAACTAACTACGACTACTACTCATCAGTGATGCGCTTCACAATATCATCACCTGTGATGCCGGATGCTATAGTTGATTACGACCTATCAAATGG CAACTGGAAAATCGTCCAACAACAGGATCTTCTCCATGAACGAACAAGAATTCTCTACGGGTCTTCCTCTTCCAGTGATCCCACAGGAAAACTATCGAAT ACCTTGAGTTTTATTCCATCCCATGAAGTCAAATCTGAAGCTACGAATCCGTGGAATGACCTCTCCGAGTTTTATGCTTGCGAACGCCACTTGGTCTCTT CTTCACATAACGAAGCAACAGTACCTTTAACGGTTGTCTATTCACGCACGATCGAGAATACGAAACACAACCCTGGATTGCTCCACGGACATGGAGCCTA TGGCGAGTTACTCGACAAAAGGTGGCGCAGCGAGCTGAAAAGCCTACTCGACCGTGGTTGGGTCATTGCATATGCCGATGTCAGAGGTGGAGGTGGCCAT GGCAAGTTATGGCATCAGAGCGGCAGAAGCTCAAACAAACTTAATTCTGTGAAGGATTATGTCTCCTGTGCCAAGTTCTTGATTGAGCAAGAGATTGTGG GAGAGAACAAGCTTGCTGGTTGCGGATATAGTGCTGGTGGACTTCTGGTTGCTGCTGCTATAAATGATTCCCCTGATTTGTTTCGTGCTGCAGTCTTGAA GGTCCCCTTCCTGGATGCAACGAGCACTCTTCTGTACCCGATCATTCCACTTACAGCAGCCGACTACGAAGAGTTCGGGTACCCTGGTGACAAAGACGAC TTTCGTGCCATACGTGAATACTCACCATACGACAACATTAAAAAGGATGTCCTTTATCCTGCAGTACTCATCACCTCATCCTACAACACACGATTTGGTG TATGGGAAGCAGCAAAATGGGCTACAAGAGTGCGCGAACTCACCATTTATGACCCGAAACGACCGGTGCTGCTTCATTTCTTTGCCGATATTGTAGAGGA GAATCGATACATGCAATCCAAGGAGGCAGCTTTAGAGACCGCGTTTCTTTTGAAGACGGTGGATGCTTGA
AA sequence Show only first row Show all	>Lus10017568 pacid=23163149 polypeptide=Lus10017568 locus=Lus10017568.g ID=Lus10017568.BGIv1.0 annot-version=v1.0 MANLLSSINRLPSITRFLRRYRAPRQTNPPVPPKPPKPPQKPQTFTFNDATWDDPYSWMSKLNDPVARRHMDVVMEQEEKYTEAVMSNSEKLQSKLQTEM ASRMQFDLSTPPVRWGPWLYYRRVEEGKQYSVLCRRLASLNEEFISNKSPFTGFDFTSGKKIEQKLLDYNQEAERFGGYAYEELSEISPDQKFLAYTMYD KDNDYFKLCVRNLNSGALCSKPQADRVCNIAWAKGGQALFYVVTDQHKKPCRLYCSMIGSTDEDVLLLDEPHENVHINIRHTKDFHYVCVNIFSPSYSKV FLVNAADPFSGMNLVWQCHSPVHCVVEHHQGYLYLFTDAPKEGRSVDHHYLLRSHVDTSSGARIWENVFLDDQDMIVEDVDFCNTHMVLIVREGWSFRLC SLSLPLAGTKSGPAYLKELNPTYLPLPGHVSQISPGTNYDYYSSVMRFTISSPVMPDAIVDYDLSNGNWKIVQQQDLLHERTRILYGSSSSSDPTGKLSN TLSFIPSHEVKSEATNPWNDLSEFYACERHLVSSSHNEATVPLTVVYSRTIENTKHNPGLLHGHGAYGELLDKRWRSELKSLLDRGWVIAYADVRGGGGH GKLWHQSGRSSNKLNSVKDYVSCAKFLIEQEIVGENKLAGCGYSAGGLLVAAAINDSPDLFRAAVLKVPFLDATSTLLYPIIPLTAADYEEFGYPGDKDD FRAIREYSPYDNIKKDVLYPAVLITSSYNTRFGVWEAAKWATRVRELTIYDPKRPVLLHFFADIVEENRYMQSKEAALETAFLLKTVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66960			Prolyl oligopeptidase family p...		Lus10017568 [exp]	0	1
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	1.0	0.9036
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	3.7	0.8927
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10001271 [exp]	6.6	0.8691
AT3G22990		LFR	LEAF AND FLOWER RELATED, ARM r...		Lus10006635 [exp]	9.9	0.8719
AT1G13030			sphere organelles protein-rela...		Lus10006228 [exp]	11.0	0.8746
AT3G61700			Plant protein 1589 of unknown ...		Lus10019011 [exp]	14.5	0.8804
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	16.9	0.8839
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	17.4	0.8833
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	18.5	0.8791
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	20.3	0.8342

Compare expression of checked genes

Lus10017568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.