Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18080 562 / 0 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 553 / 0 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 552 / 0 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G49660 114 / 2e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 102 / 8e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 99 / 1e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 95 / 5e-22 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 97 / 6e-22 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G23430 97 / 7e-22 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 96 / 1e-21 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017569 [exp] 632 / 0 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003080 [exp] 585 / 0 AT1G18080 506 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 112 / 3e-28 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 108 / 4e-27 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 107 / 1e-26 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 106 / 2e-26 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 99 / 7e-23 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 98 / 2e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10041007 [exp] 96 / 1e-21 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052700 [exp] 585 / 0 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G041600 [exp] 581 / 0 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 109 / 2e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 108 / 6e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 107 / 1e-26 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 98 / 2e-22 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 97 / 4e-22 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G050100 [exp] 97 / 6e-22 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 94 / 7e-21 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.006G045800 [exp] 93 / 9e-21 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017570 pacid=23155520 polypeptide=Lus10017570 locus=Lus10017570.g ID=Lus10017570.BGIv1.0 annot-version=v1.0 ATGGCTGATGGATTGGTCCTCCGCGGTACGATGCGCGCTCACACCGATCAGGTGACCGCCATCGCCACCCCGATCGACAACTCCGATATGATTGTCAGCT CCTCTCGCGACAAGTCCATCATCGTCTGGAATCTGACCAAGGAGGAGAACACCTACGGTGTGGCTCGCCGCCGCCTCACCGGCCACTCTGGATTCGTCCA GGACGTCGTCCTGTCCTCCGACGGACAGTTCGCTCTCTCTGGTGCCTGGGACGGCGAGCTCCGACTGTGGGATCTTGCTGCCGGCGTCTCTGCTCGCCGC TTCGTCGGTCACACCAAGGATGTCCTCTCCGTCGCTTTCTCGATCGACAACCGTCAGATCGTTTCTGCTTCACGTGACAAGAGTATCAAGCTGTGGAACA CTCTAGGAGAGTGCAAGTACACCATTCAGGACGGAGATGCCCATTCCGATTGGGTGAGCTGCGTTCGCTTCAGTCCCAGCACTCTCCAGCCAACCATTGT TTCTGCCTCATGGGACCGTACCGTCAAGGTATGGAATTTGACTAACTGCAAGCTGAGGTGCACTTTGGCTGGTCACGCTGGTAATGTGAACACTGTTGCT GTTTCACCTGATGGCTCCTTGTGTGCAAGTGGTGGGAAAGACAATACGATTTTGCTGTGGGATTTGGCTGAGGGTAAGAAGCTTTACAATTTGGACGCTA GTGCTGCTATCCACGCTCTTTGCTTCAGTCCCAACAGGTACTGGCTGTGTGCTGCTACTGAGAACAGCATTAAGATATGGGATTTGGAGAGCAAGAGCAT TGTTGAGGATTTGAAGGTTGATCTCAAGGCTGAGGCCGAGAAATCCGAAGGTGCAGCTCCCTCTTTGAAGAAGAACATATACTGCACATGCTTAAACTGG AGTGCGGATGGAAGCACATTGTTCAGCGGATACACAGACGGAGTGATCAGAGTTTGGGGCATCGGCCGTTATTGA
AA sequence Show only first row Show all	>Lus10017570 pacid=23155520 polypeptide=Lus10017570 locus=Lus10017570.g ID=Lus10017570.BGIv1.0 annot-version=v1.0 MADGLVLRGTMRAHTDQVTAIATPIDNSDMIVSSSRDKSIIVWNLTKEENTYGVARRRLTGHSGFVQDVVLSSDGQFALSGAWDGELRLWDLAAGVSARR FVGHTKDVLSVAFSIDNRQIVSASRDKSIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPSTLQPTIVSASWDRTVKVWNLTNCKLRCTLAGHAGNVNTVA VSPDGSLCASGGKDNTILLWDLAEGKKLYNLDASAAIHALCFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKSEGAAPSLKKNIYCTCLNW SADGSTLFSGYTDGVIRVWGIGRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	0	1
AT1G27090			glycine-rich protein (.1)		Lus10036699 [exp]	3.5	0.8944
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	3.6	0.9062
					Lus10030881 [exp]	6.6	0.8509
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	7.3	0.8757
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	8.2	0.8974
AT1G07920			GTP binding Elongation factor ...		Lus10019918 [exp]	11.7	0.8314
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	12.4	0.8839
AT1G07210			Ribosomal protein S18 (.1)		Lus10038756 [exp]	14.7	0.8400
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Lus10020500 [exp]	15.0	0.8487
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	16.7	0.8866

Compare expression of checked genes

Lus10017570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.