Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25780 226 / 4e-74 AOC3, AOC2 allene oxide cyclase 3 (.1) AT1G13280 216 / 2e-70 AOC4 allene oxide cyclase 4 (.1) AT3G25770 212 / 9e-69 AOC2, AOC3 allene oxide cyclase 2 (.1) AT3G25760 207 / 9e-67 AOC1, ERD12 early-responsive to dehydration 12, allene oxide cyclase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033535 [exp] 367 / 7e-130 AT3G25780 264 / 6e-89 allene oxide cyclase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102500 [exp] 260 / 1e-87 AT3G25780 261 / 6e-88 allene oxide cyclase 3 (.1) Potri.008G117300 [exp] 245 / 1e-81 AT3G25780 275 / 4e-93 allene oxide cyclase 3 (.1) Potri.017G112400 [exp] 171 / 4e-54 AT3G25780 172 / 1e-54 allene oxide cyclase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF06351 [flax] [poplar] Allene_ox_cyc Allene oxide cyclase
Representative CDS sequence Show only first row Show all	>Lus10017571 pacid=23155454 polypeptide=Lus10017571 locus=Lus10017571.g ID=Lus10017571.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCAACCTACGCTTCCGCCGGCGCACCCATCAAGCTCGCCAGCCACAAAATCGGATCAACTTTCCTCGCCGCAGGCAATCCTTCCCAGCTCA ACCTCACTCCCCTGCGCCGCTATTCCCGATCACTCAGAACATCCGCTCTTCCCGGAGCAAGATCTTTCTCCTGCAATAGCCAATCCGCCTCTTCCGACAA CTCCAGACCGCCGAGTAATGTTCAGGAACTCCACGTTTACGAGATCAACGAGCGAGATCGCGGCAGCCCTGCCGTCCTCCGATTAAGCCAGAAGCCCGTC AACTCCCTCGGCGATCTCGTCCCTTTCAGCAACAAACTGTACAGCGGGGACCTGAAGAAGAGAATCGGGATCACGGCGGGGATATGCGTGCTGATCCAGC ACAAGCCGGAGAAGAAAGGTGACCGGTACGAGGCGATCTACAGCTTCTACTTCGGCGACTACGGCCAAATCTCCGTCCAAGGGTCTTACCTCACTTACGA AGACAGTCATCTTGCCGTCACGGGAGGCACGGGGATCTTCGAAGGAGTGTACGGACAGGTGAAGCTGAATCAGATCGTCTTCCCTTTCAAGATCTTCTAC ACGTTCTACCTCAAGGGGTTGAAGGCCGACTTGCCAGAGGAACTGCTCGAGGCGCCCGTCGAGCCCAGTCCGGCGGTGGAGCCGGCGCCCTTTGCCAAGG CGTGCGAGGAGCCACATGGAGCCATCCCGAATTTCACCGACTGA
AA sequence Show only first row Show all	>Lus10017571 pacid=23155454 polypeptide=Lus10017571 locus=Lus10017571.g ID=Lus10017571.BGIv1.0 annot-version=v1.0 MASSTYASAGAPIKLASHKIGSTFLAAGNPSQLNLTPLRRYSRSLRTSALPGARSFSCNSQSASSDNSRPPSNVQELHVYEINERDRGSPAVLRLSQKPV NSLGDLVPFSNKLYSGDLKKRIGITAGICVLIQHKPEKKGDRYEAIYSFYFGDYGQISVQGSYLTYEDSHLAVTGGTGIFEGVYGQVKLNQIVFPFKIFY TFYLKGLKADLPEELLEAPVEPSPAVEPAPFAKACEEPHGAIPNFTD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25780		AOC3, AOC2	allene oxide cyclase 3 (.1)		Lus10017571 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	1.0	0.9309
AT1G02816			Protein of unknown function, D...		Lus10009854 [exp]	1.4	0.9227
AT1G04000			unknown protein		Lus10008237 [exp]	3.6	0.8860
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	3.9	0.9142
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	4.5	0.9184
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10014758 [exp]	4.6	0.9061
AT5G67020			unknown protein		Lus10019344 [exp]	7.3	0.9213
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	7.5	0.9003
AT5G08060			unknown protein		Lus10040513 [exp]	8.5	0.8874
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	9.0	0.8925

Compare expression of checked genes

Lus10017571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.