Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033536 [exp] 558 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112500 [exp] 317 / 2e-105 ND / Potri.004G102400 [exp] 294 / 8e-97 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017572 pacid=23155567 polypeptide=Lus10017572 locus=Lus10017572.g ID=Lus10017572.BGIv1.0 annot-version=v1.0 ATGCATTTCGATTCTTCAATCTCTCTGTACCCTTCAATTCCTCAACAACCTGCTCCTTCTTCCCTCCCATCCAAACCCCAAACCCTAATTCCTCCCCCAT CTTCTTCCTCTTCATTCCTCCTCCTCCGCCACAATCAAAGCGCTGAACCAACTGTCCTGTTCCTCGTTGCTTCCCCTTACTTGGGTGGCGCCAAGATCCT TCTTAAGTTGTATGTTTTGGATAAAAAGAAGAATGCTTTTGCTAAAGCGCCTCAAGTCTATTGCAGTCAGAAGGGTCTCGGTTTCGTCCCCAATTTGGGG GTTCTGCTCGATGTCGATCATGGGGTGTCGTTGAAGATGGTTGGCTCGGTTAATTTCTTCTGTTTGTACTCGGTTTCCAGCAGGAAAGTTTGGGTCTTTG CTCTGAAGTTGGTCGATGGTGAAGCGGCGTTGAAAATGATGAGGTGTGCGGTGATCGAGTGTGCTGTGCCTGTTTGGTCTATTAGTGTCTCGTTTGGGTT CTTGATTTTAGGGCAGGATGGTGGGGTTAGAGTTTTTAGTCTGAAGCAGCTTGCCGCCAAGGGGAAAGTCAACAACAAGGCTAAGGGGAGTTCAAGTTCA GATGGAACGTTGGAGCTGAACGGTAAAGTTGAGGTTTTGAAGTTGCCAAATGGTATGATTGGTGGAGGACACACGTCTGATGGTTTTGGTTTGACTTCTG GCCCTGCAGCCAATGGCTTCTTAAATGGGAAGATCGAAAAGCATAATGTTTCAGTAAAACCGAGATCTGTCAGATGGAGAAAAGATTCTGATCAAGCATG TTCCTGCTTTGTCCCATTTAAGAGCAAGGATGTTGAGCGCTCGGGATCCAGCATTGGGAAGGCTACGTCTATTCAGGCATTGTCCTCCAAAAAGTTTATG ATTTTGGATTCCACTGGAGACTTACATGTCTTGTCTCTGTCTAACCCAGGTGGTGGATCAAATATTGTCTCTGACATAAGAAAGATTCCCTACAGCATGA AAGTGCAAAATCTTGCTGTGCTTCCGGATATTTCTTTGAGTAAGTTGCTCTACATGCTAACAAGTTGA
AA sequence Show only first row Show all	>Lus10017572 pacid=23155567 polypeptide=Lus10017572 locus=Lus10017572.g ID=Lus10017572.BGIv1.0 annot-version=v1.0 MHFDSSISLYPSIPQQPAPSSLPSKPQTLIPPPSSSSSFLLLRHNQSAEPTVLFLVASPYLGGAKILLKLYVLDKKKNAFAKAPQVYCSQKGLGFVPNLG VLLDVDHGVSLKMVGSVNFFCLYSVSSRKVWVFALKLVDGEAALKMMRCAVIECAVPVWSISVSFGFLILGQDGGVRVFSLKQLAAKGKVNNKAKGSSSS DGTLELNGKVEVLKLPNGMIGGGHTSDGFGLTSGPAANGFLNGKIEKHNVSVKPRSVRWRKDSDQACSCFVPFKSKDVERSGSSIGKATSIQALSSKKFM ILDSTGDLHVLSLSNPGGGSNIVSDIRKIPYSMKVQNLAVLPDISLSKLLYMLTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017572 [exp]	0	1
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	1.4	0.8615
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	2.8	0.8556
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	3.7	0.8788
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	6.3	0.8500
AT5G09880			Splicing factor, CC1-like (.1)		Lus10002093 [exp]	6.5	0.8392
					Lus10029790 [exp]	8.1	0.8497
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	8.8	0.8417
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	9.0	0.8574
					Lus10033536 [exp]	10.2	0.8073
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	11.2	0.8433

Compare expression of checked genes

Lus10017572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.