Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16030 179 / 6e-54 unknown protein AT3G02500 165 / 5e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033537 [exp] 535 / 0 AT5G16030 184 / 5e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102200 [exp] 279 / 7e-93 AT3G02500 192 / 1e-59 unknown protein Potri.017G112600 [exp] 270 / 2e-89 AT3G02500 197 / 2e-61 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017573 pacid=23155447 polypeptide=Lus10017573 locus=Lus10017573.g ID=Lus10017573.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAACAGCGGAACATGGCTCTCGACGACGAGAAGACTTGAGCAGTCTAAGAGACTGGACAGTAAGACCTCAACTGAACCGCGACAACACGA AATCCAGGAGGTTCTCAGGATCCTACATCAGAAGTTTCAGAGAAGATGCCACCAAATCATTCACCATTTCCAGCACTGCCTCCTCTCCAGGTTACCCTCT AGAAGAAGAGATTGACCCATCAACATACTCATTCACCACTGCTCTGAAAGCTCTGCAGACAAAGTCAGGGATGTGTAAAAGCTGGGAATGCTTATCACCA GATGGGTTTGCTTTGAACTCGAAATGGAACGAAGCTGAGAAGTACATATGTAACCCTCTTTCAGGGGAGGTTCCCATGGAGTGCCTATCAGCTAAGACTT TGAGTGGAAGGTCATTCTACCCCGCCGCCACTAATAGCAACAGGACCACAATGTCTGCACCTCTGGTCTACTCGAGGCGAATCCACGTTAAGCCTGCAGC AGCGTCGAAGGATCGTCCGAATTGTAATCCTGTGCATTCTCCCATTCCAGAAACCAAAAGCGAGAGCTGTGGTAGTACTACTAGAGATATTGGAACACAA AGCACCATACCTGAGCTCAGTTCAAGTGGGTCTAATAGCCCAAGTAAAAAGCCTCCTCCTTTCGTAACAGAGATGTCGTCGCCATTGAAGAAAAGTGAAG CAGAAAGTGGTAGAGATGGAGATCCCCCCAGCTGCAATTCAAAGATGAAAGCTGCAGAAAAGACTCACATAGCAGAGGAGACGACCAAAATAGAGGGAAG GAAAAAGGACAATGATATAGTATGGAAGGGCAACACCACCACCACCACCACCACCAGCCAAGGCGGTTGTTTGTCATGGATGAGAAAAAGGCAAAGAGAG AAACAGAAACCCAAGAACAAAAACATCTTCCTCCGTAAGCTTGAAGGATGCTGA
AA sequence Show only first row Show all	>Lus10017573 pacid=23155447 polypeptide=Lus10017573 locus=Lus10017573.g ID=Lus10017573.BGIv1.0 annot-version=v1.0 MASSTAEHGSRRREDLSSLRDWTVRPQLNRDNTKSRRFSGSYIRSFREDATKSFTISSTASSPGYPLEEEIDPSTYSFTTALKALQTKSGMCKSWECLSP DGFALNSKWNEAEKYICNPLSGEVPMECLSAKTLSGRSFYPAATNSNRTTMSAPLVYSRRIHVKPAAASKDRPNCNPVHSPIPETKSESCGSTTRDIGTQ STIPELSSSGSNSPSKKPPPFVTEMSSPLKKSEAESGRDGDPPSCNSKMKAAEKTHIAEETTKIEGRKKDNDIVWKGNTTTTTTTSQGGCLSWMRKRQRE KQKPKNKNIFLRKLEGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16030			unknown protein		Lus10017573 [exp]	0	1
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10020764 [exp]	3.2	0.8486
					Lus10011725 [exp]	6.0	0.8542
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	6.6	0.8609
AT4G11130		SMD1, RDR2	SILENCING MOVEMENT DEFICIENT 1...		Lus10002361 [exp]	8.4	0.8763
AT3G22520			unknown protein		Lus10021916 [exp]	11.0	0.8217
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	11.8	0.8183
AT5G02440			unknown protein		Lus10025345 [exp]	11.8	0.8252
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	13.9	0.8441
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	14.2	0.8429
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	15.0	0.7810

Compare expression of checked genes

Lus10017573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.