Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38660 306 / 9e-105 APE1 acclimation of photosynthesis to environment (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033538 [exp] 426 / 1e-151 AT5G38660 343 / 1e-118 acclimation of photosynthesis to environment (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102100 [exp] 327 / 8e-113 AT5G38660 355 / 6e-124 acclimation of photosynthesis to environment (.1.2) Potri.017G112700 [exp] 317 / 3e-109 AT5G38660 302 / 4e-103 acclimation of photosynthesis to environment (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11016 [flax] [poplar] DUF2854 Protein of unknown function (DUF2854)
Representative CDS sequence Show only first row Show all	>Lus10017574 pacid=23155504 polypeptide=Lus10017574 locus=Lus10017574.g ID=Lus10017574.BGIv1.0 annot-version=v1.0 ATGAAAACCGTGAGTGCATCTCCAGTAATGGCGGCAAAAGTAGGAACCTTTCCCGGTTTCCCTTCCGTGACTCGCCCTCTCAGCTTCTTCATCTCTTCGC ATCCGGCTTCTTCTTCTTCTTCTCCACCGAAAACGAATTTGAACCTAGGACGCAGCAACTACAATATCAGGCTTCGTTTCGTCGCCAAGGCTGCGGATTC CACGCAGCCTACTACTTCTTCTTCCTCCAGTTCCAAAACCCTTGTTCCTGATAACGAATTCACTCTCGCTAAGGTCTCGTTTGGTGTTATCGGGCTAGGT CTTGGTGTTTCACTCTTGTCGTATGGCTTTGGGGCATATTTTAATATCTTAGCAGGATCCGAATGGTCTGCTTTAATGCTCACTTATGGATTCCCTCTTG CAATCATTGGTATGGCTCTTAAGTATGCAGAACTGAAGCCGGTCCCATGCTTGACTTATTCGGACGCTGAAGCATTGAGGGAAACATATGCCACTCCAAT CTTAAAGCAGGTCAGAAACGACGTTACCAGGTACCGATATGGAGATGAGCAACACTTAGAAGAGGCATTGAAGCGAATATTCCAGTATGGTCAGGGGGGA GGAATACCTCGTAGGAGTGCACCGATTCTACAAATGATTCGAGAAGAGGTTACCGATGATGGTAAATATTGCCTTGTAATGGTATTCGAGGCGAAAGCTC TAGAATTATCAGACTTTGAGCGAAGACAGGCAAAATTCTCTTCCTTTTTTGGACCAGATGTCACAGCTGAAGTTGGGAAGGGGGAAAATGATCTATTCGA AGTGCGGCTCATTTCGAATTTAAATGCCAAAGTATCGTCTTCGTAA
AA sequence Show only first row Show all	>Lus10017574 pacid=23155504 polypeptide=Lus10017574 locus=Lus10017574.g ID=Lus10017574.BGIv1.0 annot-version=v1.0 MKTVSASPVMAAKVGTFPGFPSVTRPLSFFISSHPASSSSSPPKTNLNLGRSNYNIRLRFVAKAADSTQPTTSSSSSSKTLVPDNEFTLAKVSFGVIGLG LGVSLLSYGFGAYFNILAGSEWSALMLTYGFPLAIIGMALKYAELKPVPCLTYSDAEALRETYATPILKQVRNDVTRYRYGDEQHLEEALKRIFQYGQGG GIPRRSAPILQMIREEVTDDGKYCLVMVFEAKALELSDFERRQAKFSSFFGPDVTAEVGKGENDLFEVRLISNLNAKVSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Lus10041171 [exp]	1.4	0.9652
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Lus10021890 [exp]	2.0	0.9644
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	2.4	0.9606
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10003337 [exp]	3.5	0.9568
AT5G13720			Uncharacterised protein family...		Lus10019743 [exp]	3.9	0.9484
AT5G13720			Uncharacterised protein family...		Lus10016380 [exp]	5.8	0.9342
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10029755 [exp]	6.0	0.9440
AT4G31530			NAD(P)-binding Rossmann-fold s...		Lus10009715 [exp]	6.7	0.9401
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	7.7	0.9356
AT2G21960			unknown protein		Lus10005779 [exp]	8.0	0.9413

Compare expression of checked genes

Lus10017574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.