Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38690 385 / 2e-127 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67780 365 / 4e-120 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 318 / 9e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT2G23530 100 / 7e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 94 / 3e-20 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G09060 46 / 8e-05 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033539 [exp] 1059 / 0 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10000845 [exp] 110 / 1e-25 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10019647 [exp] 107 / 7e-25 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 99 / 2e-22 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 66 / 2e-12 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G024400 [exp] 294 / 2e-90 AT5G38690 271 / 1e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.006G257400 [exp] 275 / 3e-83 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.007G036200 [exp] 105 / 2e-23 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.009G108400 [exp] 100 / 2e-22 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.012G044400 [exp] 77 / 3e-15 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 46 / 9e-05 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G006200 [exp] 43 / 0.0007 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [flax] [poplar] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Lus10017575 pacid=23155440 polypeptide=Lus10017575 locus=Lus10017575.g ID=Lus10017575.BGIv1.0 annot-version=v1.0 ATGACTATGGCATCCAGCTCTGCTGCTATGGAGAACGGTGTTCCTCAGCTGTTGAACGAAGGGAGGAGTCGGAATACAAATCCTGGAGTTCGAGTTGTGG GCGGTAGAATTTATGATTCTTACAATGGGAAGACTTGCCATCAGTGTCGCCAGAAGACTATGCATGTAATGGCTCCGTGTAAGAAACTGAAAGTGAAGAA CAAACGATGTTCCATTACTTATTGCCCTAAGTGCTTGCGGAATAGGTACGGAGAGGTGGTTGATAATGTCTCACAGGTGGATAACTGGCACTGTCCAAAG TGCCGAGGCATTTGCAATTGCAGCTTTTGCAGGAAGAAGCAAGGTCACCCACCCACTGGTATCCTCGCCCATACAGCAAAGCAACATGGGTTTGCATCTG TTTCTGAACTGTTAATGGTGAAAGGCCCTGAAAATTTTGCGTATGCTAGGGCAAAGAAAACTGCGAAAATAGTGGTATTGGAGCCTAAAGTTGCTTCACC AGGGAAGCCAGGAAAGGAGTATTCTTTGGATGGAAACAGTGATTTTCCCTTGAATTCTCAGGATGAAATTTCAAGTCCCAAGAGTAAGAAGCATAGGGTA GCTGAAGAAACTTCAGTGAAAGAAGACCCTACCCAAGATGATGAAAAGGCAACCAGTGACCTTAGTGAAAATGATAGCCTTGAAACCAAGACGAAGCCAT CTGAAAAATCATGTCGGATTCCTCAGAAAGAAATTGTACTGCCCGAAATTCCATTGCCTCAAGGTTCATGCTTAACTGAAGTGGCAGGAGTTGAACTGGG TCCTGAAGATGTTGGACATGCCTTACAATTCCTGGCCTTTTGCAATGCGTTTGAAAGGGAATTTGATGTGAAGAAAGGGCATGCTGAAGCAGTTATTAGG GAACTAGCAAAGGCCCGGCGAGGATGTCGGTCACAGTCCTCTTTAGCAATCCAGTTTCATATCCAGCTGCTGTCACTCATTCAAGATTATGTTGATGAAC GGTGTCCAACCTTAAGTCCGACAGATGGTGAGAATTCATGGCTTCTATCACTGGGAGGTCTTGTCTCCAAGTCCCCTATCATGTCGAAGGAATTTCCTCC CGACTGTTTTGGGAAAGGGAATGAAGGGTATGAGGAGTTGAGCATCACCGAAAGGCTCAAACTTCTAACTTTTCTATGCGATGAAGCTCTCAACACAAAT GAATTGAGGCGCATCATTGATGGTCAAAATATTGAATTTGATCAAAGTAAGAAGGAAGCAAAGGCAAGAGCTTCTGCTGCAAAGGACAAGGTAAAGGAAT TGAACAGGAAGAGTCAGGACGAGATAGCAAAAGCTCAACTTGCAAAAAACGGGGCTCTTTTAACTATTCCTGAGCATGAAGCATTAACGTCTGAGATAAA CATGCAAATTTCTCAGGCTCAGGCAGAAATGATGGAGGCCAAGCAGATGGTACCTAAGGAATCACAAAGATCTGATGCTGTGAGAACAGCCCCCATGTTT GTGGATGCCAAGGGTCGGGCATTTTGGAGACTAAATAGCTACAACAATCAGGAAGTCATCTTGCTTCAAGATTTAGGTGAATGCGAAATGGATTCACCCA GCGAGAAGTGGTTTGTATATAGTGAAGCACAGAAACCAGAAGTTGAGTACTATATATCTGAGACGAGGCAAGTCATCACAATGAGATTATGTCTGATGTG TCGATTTCAAATTGGAATTTTGTGTTTACTCGGGTGTTAA
AA sequence Show only first row Show all	>Lus10017575 pacid=23155440 polypeptide=Lus10017575 locus=Lus10017575.g ID=Lus10017575.BGIv1.0 annot-version=v1.0 MTMASSSAAMENGVPQLLNEGRSRNTNPGVRVVGGRIYDSYNGKTCHQCRQKTMHVMAPCKKLKVKNKRCSITYCPKCLRNRYGEVVDNVSQVDNWHCPK CRGICNCSFCRKKQGHPPTGILAHTAKQHGFASVSELLMVKGPENFAYARAKKTAKIVVLEPKVASPGKPGKEYSLDGNSDFPLNSQDEISSPKSKKHRV AEETSVKEDPTQDDEKATSDLSENDSLETKTKPSEKSCRIPQKEIVLPEIPLPQGSCLTEVAGVELGPEDVGHALQFLAFCNAFEREFDVKKGHAEAVIR ELAKARRGCRSQSSLAIQFHIQLLSLIQDYVDERCPTLSPTDGENSWLLSLGGLVSKSPIMSKEFPPDCFGKGNEGYEELSITERLKLLTFLCDEALNTN ELRRIIDGQNIEFDQSKKEAKARASAAKDKVKELNRKSQDEIAKAQLAKNGALLTIPEHEALTSEINMQISQAQAEMMEAKQMVPKESQRSDAVRTAPMF VDAKGRAFWRLNSYNNQEVILLQDLGECEMDSPSEKWFVYSEAQKPEVEYYISETRQVITMRLCLMCRFQIGILCLLGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38690			Zinc-finger domain of monoamin...		Lus10017575 [exp]	0	1
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	5.8	0.8973
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	5.9	0.9168
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	13.0	0.8946
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	15.0	0.8815
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10017804 [exp]	15.9	0.8563
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	16.6	0.7676
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	17.3	0.8937
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	18.2	0.8269
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	20.2	0.8808
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	22.6	0.7910

Compare expression of checked genes

Lus10017575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.