Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1) AT5G46530 53 / 4e-09 AWPM-19-like family protein (.1) AT1G29520 48 / 2e-07 AWPM-19-like family protein (.1) AT5G18970 45 / 3e-06 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033541 [exp] 109 / 8e-31 AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1) Lus10014456 [exp] 97 / 1e-25 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 97 / 2e-25 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10004587 [exp] 56 / 7e-10 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10011973 [exp] 54 / 1e-09 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10015255 [exp] 51 / 2e-08 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 50 / 6e-08 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113000 [exp] 134 / 2e-40 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 89 / 1e-22 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 47 / 8e-07 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 46 / 2e-06 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [flax] [poplar] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Lus10017578 pacid=23155571 polypeptide=Lus10017578 locus=Lus10017578.g ID=Lus10017578.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGGTTGATGAGTCCTATGTTAGTAGTGAACTTGGTGGTTATCTTCATCGTACTTGGTCTTGCCGCTTGGTCTCTTGACAAATACATCGACG GCCAACAGAATCACCACCATTTGGGAGGGAATGAGTCCACAATCTTCATGCTGGTCTATGCACTGATTGCTGGAGCAGTTGGTGCCGCCTCGACGCTGTT TGGGTTCATCCACCTTCGGGCATGGACGAGTCAGAGCTTGGCCTCTGCCGCCTCTTTGGCGCTCTTCTCTTGGGCACTTGCTGCTCTCTCTTTTGGAGTG GTATGCAAAGAGGTGATCCTTGGAGGCCACAGAGGCAAGCGCCTGCAAACGCTGGAAACGCTCGTAACGGTGTCGTTCCTGAGTCAGCTGCTGTATCTGG TACTGCTTCATGCTGGGATGGTCAGCACAAGGTTCGGACCTAACTTCCATTCTCCTGCTCATCATCCCGCTAGCGACCCTGCATCTACACCTGGCGTTTC CAGTGTTTAA
AA sequence Show only first row Show all	>Lus10017578 pacid=23155571 polypeptide=Lus10017578 locus=Lus10017578.g ID=Lus10017578.BGIv1.0 annot-version=v1.0 MGRGLMSPMLVVNLVVIFIVLGLAAWSLDKYIDGQQNHHHLGGNESTIFMLVYALIAGAVGAASTLFGFIHLRAWTSQSLASAASLALFSWALAALSFGV VCKEVILGGHRGKRLQTLETLVTVSFLSQLLYLVLLHAGMVSTRFGPNFHSPAHHPASDPASTPGVSSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	0	1
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	1.0	0.8466
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10019539 [exp]	2.4	0.6566
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	5.7	0.6526
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10026128 [exp]	5.7	0.7392
AT5G16100			unknown protein		Lus10020810 [exp]	5.9	0.6541
					Lus10039384 [exp]	10.2	0.6794
					Lus10014629 [exp]	14.3	0.6575
					Lus10017802 [exp]	17.2	0.6397
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	20.2	0.6190
AT3G49070			Protein of unknown function (D...		Lus10018879 [exp]	21.4	0.6445

Compare expression of checked genes

Lus10017578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.