Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44260 525 / 0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 503 / 3e-174 Plant protein of unknown function (DUF946) (.1) AT3G01880 455 / 8e-155 Plant protein of unknown function (DUF946) (.1) AT3G01870 455 / 9e-155 Plant protein of unknown function (DUF946) (.1) AT5G43950 441 / 9e-150 Plant protein of unknown function (DUF946) (.1) AT5G18490 438 / 1e-148 Plant protein of unknown function (DUF946) (.1) AT1G04090 419 / 6e-141 Plant protein of unknown function (DUF946) (.1) AT3G04350 419 / 7e-141 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017580 [exp] 519 / 2e-180 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10033542 [exp] 521 / 5e-180 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 487 / 2e-167 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10024955 [exp] 452 / 3e-154 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10000813 [exp] 447 / 8e-152 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 440 / 4e-149 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 439 / 1e-148 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232500 [exp] 567 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 565 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 562 / 0 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 437 / 7e-148 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 431 / 2e-145 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.002G256802 [exp] 138 / 1e-37 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10017579 pacid=23155512 polypeptide=Lus10017579 locus=Lus10017579.g ID=Lus10017579.BGIv1.0 annot-version=v1.0 ATGGGCAACTGCCTCCCTCTTCCTTCCAAACCCACCACCACCACAAGAGCCATATCATCTTCATCTCCCAAACTCCTCCCCATCGATACCATCTTCACCC TCCCTTCCCCGCTCCCCACGTTGCCCACCGCCACCTCCTCCTCCTCCTTCGCCACCGGAACCATCGACCTCGGCGGCGGCTTACAAGTCTCCCTCCTCAC TTCCTTCGAAAAAGTCTTCTCCACGTCGCAAGGCGGCCCCGCTAATCTCGGAGCTTCCTTTTTCCAACCCTCCAACCTCCCTTCCGGCTTCCACCCGCTC TGCTCCTACTGCCAGCCCAACAACTCCGCTTTCCACGGCTGGGTCCTCGTCGCCAAAGACGACGGAAACGACGCGCTCAAGCTACCCGTGGACTACACGC TTGCTTGGTCGTCTAGCGTTGACTTGCAAGTCAAGCAACAAGGATACATCTGGTTACCTGTCCCACCTGAAGGTTACAAACAGCTCGGCCACGTCATCAC AACCTCCCCCGACAAGCCTCACCCCGATGCCATCCGCTGCGTTCGGTCCGACCTCACCGACCAATGTGAGTCCGACACGTTGATATGGAGTGACGCCAAC GTGGCAAGTTTCTTCACCACCCGGCCTATCGCTAGAGGGATTAAAGAGGCGGCCGTCCCGGTTGGGTCATTCATGGTTGAACCGTCCACGGACGGTTCAA CCCCAACTACATTAGCTTGTTTGAAAAATGTGAACTACTCATCATCGCAAATTTCATTGCAATCGATGCCGAATCTAGAACAAATCGAGGCAATCTTTCG TGCTTACTCGCCACGAGTTTACTTTCATCCCAAGGAACAATACTTTCCTTCTTCGGTGGATTGGCTGTTCAAGAACGGAACACTTCTATACACAAAAGGG AAAGAATCCGCGCCTGAACTGGTCCAACCGGATGGGTCGAACCTCCCAACGGGCGGTTGGAACGACGGCGAGTACTGGTTGGACCTACCAAAGGAGAAAT CGGAAAGAGAGAGAGTAAAGAAAGGTGACGTGGAAGGCGCACAATCATATTTACACGTAAAGCCAATGTTCGGGGGTACATTTACGGACATTGCCACTTG GATCTTCTACCCGTACAACGGCTCCGCGAGGCTAAATGTGGGAATAATCCCGAACATTCCGTTACCGATAGGACAGCACGTAGGGGATTGGGAGCATTTG ACTTTGAGGGTCAGCAACTTCGACGCCCGGCTACGTAGCGTGTATTTCTCCCAGCACAGCGGCGGGCAGTGGGTGGCTGCGCCGGAGCTGGAGATGGAGG ACGGGAACAAAACGGTGGCGTTTTCATCGAGGAACGGGCACGCGATGTACCCGAAGGAAGGTGTGGTGATGCAAGGGAGTACGTTCGGGGGGATAAGGAA TGACGCGGCGAGGAGTAGTAAGAAGTTGGACATGGCGGCGGCGGGGTTTAAGGTGGTGGCGGCGGAGTATTTGGGGGTGGCGGAGCCGACGTGGCTGAAC TATATGAGGGAGTGGGGGCCGAAGGTTGAGTATGCGCTGTCGAAGGTGACGTTGCCGATAAAGTTGCCGAAGGAGTTGTTTGGGGAGGAAGGGCCCACCG GCCCGAAAGCTAAGAGGAACTGGGAGGGGGATGAAGTTTGA
AA sequence Show only first row Show all	>Lus10017579 pacid=23155512 polypeptide=Lus10017579 locus=Lus10017579.g ID=Lus10017579.BGIv1.0 annot-version=v1.0 MGNCLPLPSKPTTTTRAISSSSPKLLPIDTIFTLPSPLPTLPTATSSSSFATGTIDLGGGLQVSLLTSFEKVFSTSQGGPANLGASFFQPSNLPSGFHPL CSYCQPNNSAFHGWVLVAKDDGNDALKLPVDYTLAWSSSVDLQVKQQGYIWLPVPPEGYKQLGHVITTSPDKPHPDAIRCVRSDLTDQCESDTLIWSDAN VASFFTTRPIARGIKEAAVPVGSFMVEPSTDGSTPTTLACLKNVNYSSSQISLQSMPNLEQIEAIFRAYSPRVYFHPKEQYFPSSVDWLFKNGTLLYTKG KESAPELVQPDGSNLPTGGWNDGEYWLDLPKEKSERERVKKGDVEGAQSYLHVKPMFGGTFTDIATWIFYPYNGSARLNVGIIPNIPLPIGQHVGDWEHL TLRVSNFDARLRSVYFSQHSGGQWVAAPELEMEDGNKTVAFSSRNGHAMYPKEGVVMQGSTFGGIRNDAARSSKKLDMAAAGFKVVAAEYLGVAEPTWLN YMREWGPKVEYALSKVTLPIKLPKELFGEEGPTGPKAKRNWEGDEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44260			Plant protein of unknown funct...		Lus10017579 [exp]	0	1
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	7.9	0.9470
AT4G09990			Protein of unknown function (D...		Lus10005829 [exp]	11.4	0.9437
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	16.9	0.9419
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10024859 [exp]	19.9	0.9297
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	20.4	0.9418
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	20.5	0.9397
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	23.7	0.9351
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	25.7	0.9320
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	26.1	0.9351
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	26.9	0.9385

Compare expression of checked genes

Lus10017579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.