Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44260 567 / 0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 542 / 0 Plant protein of unknown function (DUF946) (.1) AT3G01870 491 / 5e-169 Plant protein of unknown function (DUF946) (.1) AT3G01880 488 / 1e-167 Plant protein of unknown function (DUF946) (.1) AT5G18490 435 / 2e-147 Plant protein of unknown function (DUF946) (.1) AT5G43950 427 / 4e-144 Plant protein of unknown function (DUF946) (.1) AT3G04350 427 / 6e-144 Plant protein of unknown function (DUF946) (.1) AT1G04090 419 / 6e-141 Plant protein of unknown function (DUF946) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033542 [exp] 1030 / 0 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017582 [exp] 890 / 0 AT2G44260 582 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 521 / 0 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10000813 [exp] 459 / 2e-156 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 456 / 2e-155 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 439 / 5e-149 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 439 / 7e-149 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10003007 [exp] 44 / 0.0004 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232500 [exp] 639 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 616 / 0 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 605 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 439 / 1e-148 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 432 / 4e-146 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.002G256802 [exp] 128 / 5e-34 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 53 / 5e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 44 / 0.0004 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10017580 pacid=23155574 polypeptide=Lus10017580 locus=Lus10017580.g ID=Lus10017580.BGIv1.0 annot-version=v1.0 ATGGAATCAATTTCATGGCCGTCGGTGAACGGCGGATTCGCCTCCGGAGCAATCGATCTCGGCGGCGGACTCCACGTCTTCCAAACTGCTTCGTTCAACA AAATCTGGTCTACTCAACAAGGAGGACCCGGTAATCTCGGAGCTTCCTTCTTCGAACCTTCCCAATTGCCTCCCGGCTTTTACATGCTCGGCACCTACAG CCATCCCAACGCCAACCCCAACTCCCGCGGCTGGATCCTCGCCGGAAAAGATGCTGACGAAGGAGGAGATGCGCCGCCGTTGAAGCTGCCGGTGGATTAC ACCTTGGTTTGGAACAGCAGCTCCGTTCCCGAATCGGACGGTCAAGATGGAACATGCGGTTACTTCTGGCTCCCGGTCCCACCTGACGGTTATAGAGCTG TCGGCCACGTCATCACCACCTCCCCTGACAAGCCTCCCCTCGACAAAATCCGCTGCGTCCGATCAGACCTCACAGACGAATGCCACGCTGACACGTGGCT GTGGGGCCCAACTGTCGGAGGCAATCCTGACCCGACCGGGTTCAACGTTTACAGTCTAAGCCCGATTGACGACCTCGCAGCCGCCGGAGTCAACGTCGGC ACATTCATCGCCCAATCATCCCTCAATCCAGGGCCCACGACGAACGTCTCGTGTCTGAAGAATCAAAATTATTCAATCGAGAAATTGTCTGCATCAATGC CGAATTTAGATCAAATCAAATCGCTCTTCAAGACCTACGCTCCGTGGATTTATCTCCATCCGAACGAAGAATTTCTACCTTCTTCCGTCAATTGGTTTTT CGCCAACGAGACGCTTCTAGTTGAGCGAGGGAAAGAAGCCAGCCCGACTCGGATCGACCCAAACGGGTCGAACCTGCCGCAAGGCGGTTCGAACGATGGG GCGTACTGGTTGGACCTACCGGCGGACGGAGCGGCAAAGGAGAGAGTGAAGAGAGGACAAATGTCAAGCGTGGAAGTGTATTTACATGCGAAGCCAGTCT CGGGAGGGACATTTACGGACATAGCCGTGTGGGTGTTCTACCCGTTCAACGGTCCGGGAAGGGCAAAAGTAGAATTCATTAGTAACTTAAAGCTGGGAAA ATTAGGAGAGCACGTGGGAGACTGGGAGCACGTGACCTTACGGATCAGCAACTTCAACGGGTTGCTTCAGAGCGTCTACTTCTCGCAGCACAGTGCCGGG CAGTGGGTCGGGATCACGGACCTTGAGTACCAAGCGGGGAGCCGGCCCGTGGTGTACTCTTCGCTCCACGGGCACGCAATGTACCCGAGACCCGGGCTAG TGCTGTTGGGCGGTGACAAGAACATTGGGATCAGGGACGACACGTCGAAAGGCGGGATGGTGGTGGATACGGCAGCGGCGTTCACGGTGGTGGCGGCGGA GTATCTAGGAAAGGAGGCGGTGGTGGAACCGCCGTGGCTGAACTACATGAGGGAGTGGGGCCCGAAGATTGATTACAACGTGGACGCTGAGCTGGCAGCG GTGAGGAAGTTGCTCGTTGGGAAGCTGAAGAAGGCTTTTGATAAGATGGTGAGCAATTTGCCCAAAGAGGCCCTTGGAGAAGAAGGGCCCACTGGGCCTA AGGTTAAAGCCAGCTGGACAGGGGATGAAGCTTGA
AA sequence Show only first row Show all	>Lus10017580 pacid=23155574 polypeptide=Lus10017580 locus=Lus10017580.g ID=Lus10017580.BGIv1.0 annot-version=v1.0 MESISWPSVNGGFASGAIDLGGGLHVFQTASFNKIWSTQQGGPGNLGASFFEPSQLPPGFYMLGTYSHPNANPNSRGWILAGKDADEGGDAPPLKLPVDY TLVWNSSSVPESDGQDGTCGYFWLPVPPDGYRAVGHVITTSPDKPPLDKIRCVRSDLTDECHADTWLWGPTVGGNPDPTGFNVYSLSPIDDLAAAGVNVG TFIAQSSLNPGPTTNVSCLKNQNYSIEKLSASMPNLDQIKSLFKTYAPWIYLHPNEEFLPSSVNWFFANETLLVERGKEASPTRIDPNGSNLPQGGSNDG AYWLDLPADGAAKERVKRGQMSSVEVYLHAKPVSGGTFTDIAVWVFYPFNGPGRAKVEFISNLKLGKLGEHVGDWEHVTLRISNFNGLLQSVYFSQHSAG QWVGITDLEYQAGSRPVVYSSLHGHAMYPRPGLVLLGGDKNIGIRDDTSKGGMVVDTAAAFTVVAAEYLGKEAVVEPPWLNYMREWGPKIDYNVDAELAA VRKLLVGKLKKAFDKMVSNLPKEALGEEGPTGPKVKASWTGDEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	3.6	0.9813
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	5.3	0.9809
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	5.5	0.9777
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036460 [exp]	6.0	0.9671
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	6.9	0.9763
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	8.1	0.9738
AT3G06260		GolS9, GATL4	galactinol synthase 9, galactu...		Lus10034012 [exp]	8.5	0.9696
AT1G20850		XCP2	xylem cysteine peptidase 2 (.1...		Lus10013204 [exp]	9.7	0.9746
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042526 [exp]	11.9	0.9458
AT5G61750			RmlC-like cupins superfamily p...		Lus10022071 [exp]	12.1	0.9707

Compare expression of checked genes

Lus10017580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.