Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02510 619 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 613 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G63860 181 / 2e-52 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 134 / 6e-35 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT3G26100 131 / 4e-34 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G19420 125 / 9e-31 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 122 / 4e-30 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G11580 119 / 2e-29 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G08710 116 / 1e-28 RUG1 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02300 115 / 4e-28 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033543 [exp] 737 / 0 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 171 / 1e-48 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 144 / 1e-38 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10029536 [exp] 135 / 2e-35 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10035957 [exp] 132 / 1e-34 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 125 / 7e-31 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 124 / 1e-30 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10011399 [exp] 122 / 4e-30 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10006455 [exp] 122 / 4e-30 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101800 [exp] 665 / 0 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G113200 [exp] 663 / 0 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 177 / 6e-51 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G000600 [exp] 125 / 1e-31 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.016G101700 [exp] 122 / 1e-30 AT3G53830 547 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 123 / 3e-30 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.015G009400 [exp] 120 / 1e-29 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G276900 [exp] 117 / 2e-28 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.012G018600 [exp] 115 / 4e-28 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.009G071800 [exp] 116 / 7e-28 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10017581 pacid=23155465 polypeptide=Lus10017581 locus=Lus10017581.g ID=Lus10017581.BGIv1.0 annot-version=v1.0 ATGGCTACTCGTACCTCAGTCATCGCCTGGGGCGCAGGCGAAGACGGGCAGCTGGGAATAGGCGACAATGAAGACAGGGAGTGGGTCTGCGTCGTCAAAG CTCTCCAACCCTACAAAGTCCGATCCGTCGTTGCCGGAAGCCGCAACTCTCTTGCCATTTGCGACGATGGCAAGCTGTTTACTTGGGGATGGAACCAGAG AGGGACGCTGGGTCGCCAACCGGAGACCAAGATTGAAAATGTTCCAAGTCAAGTGAAAGCCCTCGCCGATGTCAATATTGTTCAGGCGGCTATTGGTGGA TGGCATTGCTTGGCTGTTGATGATCAAGTGCGAGCTTACGCTTGGGGTGGGAACGAGTACGGGCAATGCGGTGAAGAACCTGAGCGCAAGGATGACACGG GGAGGCTACTGAGGAGGGATATAGTTATTCCTCAGCGTTGTGCTCCGAAGCTTGCAGTTCAACAGGTGGTTTATGTTGAAGAGTTAGCGGCTGGCGGTAC ACATTCAGTGGTGCTTACACGTGAAGGCCATGTATGGACATGGGGTCAACCATGGCCTCCTGGTGACATCAAGCAAATCTCTGTTCCTGTGCGGGTACAA GGCCTTGATAAAGTGAGACTCATTGCCGTGGGGGCATTTCATAATTTAGCTCTTAAAGAAGATGGAACCCTGTGGGCATGGGGCAATAATGAATACGGGC AACTCGGAACTGGTGATACCCAGCCAAGATCACAGCCTATACTTGTCCAAGGGCTGTCTGGTCTCAATTTGGTTGACATTGCCGCTGGAGGATGGCATTC CACCACACTAACCAAGGATGGCGAGGTGTATGGCTGGGGGAGAGGTGAGCATGGAAGACTGGGTTTCGGTGACAACGACAAGAGCAGCAAAATGGTTCCC CAGAAGGTTAACCTGTTGACAGGGGAGGAAATAGTTCAGGTATCGTGCGGTGGGACGCACTCAGTGGCACTGACGAAAGATGGCAGGGTGTTCTCGTTCG GGAGAGGTGACCATGGTAGATTAGGTAACGGGAGGAAGGCGACTACAGGGCAGCCAATGAAAGTACCAATCACCAGAGCAGAAGAAGATGGTGAAGAAGA AGAGGAAGAAGAAGAGTGGAGGGCGAAGCTTGTGGCGTGTGGAGGAAGACACACATTGGCAGTTGTAGAGTGGGAAGAAGAAGAGCAGCAAACGCACACC ACTGACTAA
AA sequence Show only first row Show all	>Lus10017581 pacid=23155465 polypeptide=Lus10017581 locus=Lus10017581.g ID=Lus10017581.BGIv1.0 annot-version=v1.0 MATRTSVIAWGAGEDGQLGIGDNEDREWVCVVKALQPYKVRSVVAGSRNSLAICDDGKLFTWGWNQRGTLGRQPETKIENVPSQVKALADVNIVQAAIGG WHCLAVDDQVRAYAWGGNEYGQCGEEPERKDDTGRLLRRDIVIPQRCAPKLAVQQVVYVEELAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQ GLDKVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSQPILVQGLSGLNLVDIAAGGWHSTTLTKDGEVYGWGRGEHGRLGFGDNDKSSKMVP QKVNLLTGEEIVQVSCGGTHSVALTKDGRVFSFGRGDHGRLGNGRKATTGQPMKVPITRAEEDGEEEEEEEEWRAKLVACGGRHTLAVVEWEEEEQQTHT TD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	3.0	0.8461
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037340 [exp]	3.5	0.8324
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	5.3	0.8427
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	6.2	0.8365
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	6.6	0.8038
AT5G42130		AtMfl1	MitoFerrinLike1, Mitochondrial...		Lus10042797 [exp]	6.7	0.7915
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10008510 [exp]	7.9	0.7882
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10037437 [exp]	8.9	0.8298
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	11.7	0.8271
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	14.5	0.7890

Compare expression of checked genes

Lus10017581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.