Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44260 562 / 0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) AT2G44230 533 / 0 Plant protein of unknown function (DUF946) (.1) AT3G01870 487 / 5e-167 Plant protein of unknown function (DUF946) (.1) AT3G01880 479 / 1e-163 Plant protein of unknown function (DUF946) (.1) AT5G43950 423 / 5e-142 Plant protein of unknown function (DUF946) (.1) AT5G18490 417 / 3e-140 Plant protein of unknown function (DUF946) (.1) AT3G04350 417 / 1e-139 Plant protein of unknown function (DUF946) (.1) AT1G04090 407 / 7e-136 Plant protein of unknown function (DUF946) (.1) AT1G48090 46 / 8e-05 calcium-dependent lipid-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033542 [exp] 916 / 0 AT2G44260 585 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017580 [exp] 890 / 0 AT2G44260 587 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10017579 [exp] 489 / 2e-168 AT2G44260 553 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Lus10000813 [exp] 444 / 3e-150 AT3G04350 761 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10027952 [exp] 433 / 7e-146 AT3G04350 754 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10022871 [exp] 424 / 9e-143 AT5G43950 693 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10024955 [exp] 424 / 2e-142 AT5G43950 696 / 0.0 Plant protein of unknown function (DUF946) (.1) Lus10011036 [exp] 57 / 6e-08 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 54 / 3e-07 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G232500 [exp] 633 / 0 AT2G44260 729 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.009G025102 [exp] 607 / 0 AT2G44260 746 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.018G087400 [exp] 591 / 0 AT2G44260 691 / 0.0 Plant protein of unknown function (DUF946) (.1), Plant protein of unknown function (DUF946) (.2) Potri.013G048300 [exp] 434 / 1e-146 AT3G04350 755 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.014G193100 [exp] 419 / 2e-140 AT5G43950 681 / 0.0 Plant protein of unknown function (DUF946) (.1) Potri.002G256802 [exp] 124 / 4e-32 AT3G04350 210 / 1e-64 Plant protein of unknown function (DUF946) (.1) Potri.001G148800 [exp] 54 / 4e-07 AT4G17140 3708 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Potri.008G100600 [exp] 51 / 2e-06 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06101 [flax] [poplar] Vps62 Vacuolar protein sorting-associated protein 62
Representative CDS sequence Show only first row Show all	>Lus10017582 pacid=23155514 polypeptide=Lus10017582 locus=Lus10017582.g ID=Lus10017582.BGIv1.0 annot-version=v1.0 ATGGCCTCATTCTTCCGTCTCCGGCGACCCTCAATCCTCCGGTTCATATTCTTCTTACTGAGTGTCAACGGTGCTTACTCAGCATCATCAGCAAAGGAAT CAATTTCATGGCCGTCGGTCGGAGGATTCGCCTCCGGAGCAATTGATCTCGGCGGCGGACTCCACGTCTTCCAAACTGCTTCGTTCAACAAAATCTGGTC CACCAACCAAGGAGGACCCTACAATCTCGGCGCTTCCTTCTTCGAACCTTCTCAATTGCCTCCTGGGTTTTACATGCTCGGCACCTACAGCCAACCTAAC GCCAACCCCAACTCCCGCGGCTGGATCCTCGCCGGAAAAGACGCAAACAAAGGAGGAAACGCGCCGTCGTTGAAGCAACCGGTGGATTACACCCTGGTTT GGAACAGCAGCTCCGATTTGAATTCGGTTGGCCAAGAGGGAACGGGATACTTCTGGCTCCCGGTCCCACCTGCCGGTTATAGAGCTGTGGGCCATGTCAT CACCACCTCCCCTCACAAGCCGCCCCTCGACAAAATCCGCTGCGTCCGATTGGATCTAACTAACGAATGCCACGCAGACACGTGGCTGTGGGGCCCAGTT GACGGAGATAATCCTCACCCGGACGGGTTCAACGTTTTCAGTCTCGGCATGACTGACGACCTCGCACCTTCCGGAGTCACCGTTGGCACATTCACTGCCC AATTCTCTGGCACGTCGGGGCCCGTGAAGGCCGTATCATGTCTCAAGAATCAGAATCCAATCGAGAAAATGACTGCGTCGATGCCGAATTTAGATCAAAT CAAATCGCTCTTCACTACCTACGCTCCGTGGATTTATCTCCATCCGGACGAGGAATTCCTTCCTTCTTCGGTCAATTGGTTTTTCGCCAACGGGACGCTT CTATTCCAGCGCGGGAATGAAAGCAACCCGATTCGAATTGACCCGAATGGTTCGAACCTCCCGCAAGGCGGTTCTAACGACGGGGCGTACTGGTTGGACC TACCGGCCGATGATGCGGCAAAGGACATAGTGAAGAGAGGAGAGCTGGCCGGCATGGAGGTGTATTTACATGCGAAGCCAGTTTCGGGAGGGACATTTAC GGACATAGCCGTGTGGGTCTTTTACCCGTTTAACGGGCCGGGAAGGGCAAAAGTGTTATTTATTAATAACATAAAGCTTGGAAAGTTAGGGGAGCACGTG GGGGACTGGGAGCACGTGACATTACGAATCAGCAACTTTAACGGATTGCTTCAGAGCGTCTACTTCTCGCAGCATAGTGGCGGGCAGTGGGTCGGGAGTA CGGACGTTCAGTACCAAGGAGGGAGCCGGCCCGTGGTTTACGCTTCGCTCCACGGGCACGCAATGTACCCGAGCCCCGGGCTGGTGCTGCTGGGGGGCAT CGACAAGATTGGGATTAGGGACGACACGTCGACAGGCGGGATGGTGGTGGATACGGCGGCGGCGTTCACGGTGGTGGCGGCGGAGTATTTAGGAAAGGAG GCGGTGGTGGAACCGCCGAGGCTGAACTATATGAGGGAGTGGGGCCCGAAGATTGATTACAACGTGGATGATGAGCTGGCGGTGGCGAGGAGGTTTTTGT TTGGGAAGTTGAAAAGGGCTTTTGATAGGATGGTGAGCAATTTGCCCAAGGAAGTGCTTGGGGAAGAAGGGCCCACTGGGCCTAAAGTTAAAGCCAGCTG GATAGGAGATGAAGGAAATGAAACTTGA
AA sequence Show only first row Show all	>Lus10017582 pacid=23155514 polypeptide=Lus10017582 locus=Lus10017582.g ID=Lus10017582.BGIv1.0 annot-version=v1.0 MASFFRLRRPSILRFIFFLLSVNGAYSASSAKESISWPSVGGFASGAIDLGGGLHVFQTASFNKIWSTNQGGPYNLGASFFEPSQLPPGFYMLGTYSQPN ANPNSRGWILAGKDANKGGNAPSLKQPVDYTLVWNSSSDLNSVGQEGTGYFWLPVPPAGYRAVGHVITTSPHKPPLDKIRCVRLDLTNECHADTWLWGPV DGDNPHPDGFNVFSLGMTDDLAPSGVTVGTFTAQFSGTSGPVKAVSCLKNQNPIEKMTASMPNLDQIKSLFTTYAPWIYLHPDEEFLPSSVNWFFANGTL LFQRGNESNPIRIDPNGSNLPQGGSNDGAYWLDLPADDAAKDIVKRGELAGMEVYLHAKPVSGGTFTDIAVWVFYPFNGPGRAKVLFINNIKLGKLGEHV GDWEHVTLRISNFNGLLQSVYFSQHSGGQWVGSTDVQYQGGSRPVVYASLHGHAMYPSPGLVLLGGIDKIGIRDDTSTGGMVVDTAAAFTVVAAEYLGKE AVVEPPRLNYMREWGPKIDYNVDDELAVARRFLFGKLKRAFDRMVSNLPKEVLGEEGPTGPKVKASWIGDEGNET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44260			Plant protein of unknown funct...		Lus10017582 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	2.2	0.9155
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	2.4	0.9000
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	5.3	0.8589
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	7.7	0.8840
AT5G54165			unknown protein		Lus10023231 [exp]	8.7	0.8789
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017847 [exp]	8.9	0.7921
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	9.2	0.8787
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10017848 [exp]	11.5	0.8018
AT3G52420		ATOEP7	outer envelope membrane protei...		Lus10003733 [exp]	12.0	0.8521
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	13.4	0.8483

Compare expression of checked genes

Lus10017582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.