Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 456 / 9e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 421 / 1e-139 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 412 / 2e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 404 / 3e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 399 / 4e-132 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 400 / 2e-130 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 384 / 1e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 385 / 1e-124 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 374 / 2e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G59720 372 / 1e-120 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010909 [exp] 446 / 6e-149 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 439 / 1e-146 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 438 / 2e-146 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 435 / 4e-145 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 431 / 7e-144 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 430 / 2e-143 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 426 / 9e-142 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 429 / 1e-141 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 400 / 1e-130 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237000 [exp] 690 / 0 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 476 / 1e-160 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G231200 [exp] 439 / 3e-147 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 432 / 4e-144 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 429 / 5e-143 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 423 / 2e-139 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 414 / 2e-137 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 411 / 3e-136 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 414 / 7e-136 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 414 / 2e-135 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017583 pacid=23155582 polypeptide=Lus10017583 locus=Lus10017583.g ID=Lus10017583.BGIv1.0 annot-version=v1.0 ATGGCCTCCCTAACACCATTGCCGGTGACCACCCAATTCTCCACGGAGATCCATACGCCGGCTGCAGTGTTTCAATGCATTGGGAGATGTTCGTCCATGC TGCATCTAGTCCAACTCCATTCCCAAATCGTCAAGCTTGGCCTCTCCGCCGACAATGATGCAATCGGCCGCCTTATCAAGTTCTGCAGCCAGTCCCCACG CGGCGACTTCAATTACGCACTCAAACTGTTCGACGAAATTCCTCATCCGGATGTTTTCATCTACAACACCCTTCTCACGAGTCATATCCACCACCGCTCC CCATTTTCTCAATCTCTTCTTTTATACTCCCAACTTCTGCAACAATCTTTTGTTCCCAACAACTTCACATTCCCTTCTCTCATAAAAGCTTGCTGCAATG GAAACGACATGGAAGCAGGGAAACAAATCCACGCCCATGTCCTGAAATTCGGCCTTGGATCCGACACCTGCACTCTCAACAACTTGATCCACATGTACGT TCACTTTCAATCTCTACATCAGGCAAGGAAGGTATTCGACACCATGCCGGCTCATCCTAACTCGATTTCCTGGGTTACGTTGATCTCCGGTTACACCCGT TATGGATTTGTGGATGAAGCTTTCGAGATTTTCGAATCGATTCCTGACAGGAATAACAATACTGCAGCTTGGAATGCTATTCTCGCTGCCTATGTTAAGA CCAGTCGGTTTGATGAGGCATTTGCTCTGTTTGATCAAATGAGAGAAGAAAAAGTAGTAATTGATAAGTTTGTTGCAGCAACTATGCTATCAGCTTTTAC AGGGACAGGCTCTTTGGAGAAAGGCAAATGGATGCATAAACACATCCTGGAAAATGGGATTGAGATGGATTCCAAGCTCGCTACGGCAATAGTCGACATG TACTGTAAATGCGGTTGCTTGGAGATAGCGATAGAGTTTTTCAATGGGTTGTCTGTTAAACATGTTACCTCTTGGAATGCCATGATTGGAGGGCTGGCAA TGCACGGAAAAGGAGATTCCGCCATCAAACTCTTCAAGGAAATGGAGAAGCTTGATATTGCCCCTGACAGGATCACTTTTGTGAACCTGCTCAGTGCCTG TGCTCATTCGGGGATGGTTAATGAAGGGCGGCATTATTTCCGTTACATGACTGAAAAGCACGGGATTAAACCCAGGATGGAGCACTATGGGTGCATGGTG GATATGTATGGTAGAGCAGGAATGATGAAGGAAGCAAGGGAAGTGATGGAGGAGGAGATGATGGGTAAAATGTTCCCAGATGCATCGGTGTTGGGTGCTT TTGTGGGAGCGTGTAAGAAGCACAATGAAGTTGAGATGGGAGAAGGAATAGGGAAGAGAATGGTGGAGCTTGAACCAGGAAACAGCGGCCGGTACATGTT GTTGGCTAACATGTATGAAGATGCTGGCCGATACGAAGAGGTTGGGGAGGTAAGGAAAGTGATGGATGAGAGTGGCGTGAAGAAGCAAGCCGGGGTTTCG AGGATAGAGTTGGTTGGAGGTGAGATGCGGGAGTTCAAGGCGGGTGGGAGAGCGGGGAAGGAGGTTTACGACAAAGTCGAAGAGATGATGCAGCGAGTGA GGTATGTGGATAAAGGGTACAATAACAAGGAAGAAGAAGAAGAAGAAGGATTGAAGGGGTACCATAGTGAGAAACTAGCTATGGCATTTGGATTGTTGAA AACCAAACCGGGTGATACTTTGCGGGTATCGAAGAATCTGAGGGTATGCAAAGATTGCCATCAAGTAAGCAAACTGATCTCCAAGATATATGAAAGAGAG ATCATTGTGAGGGATAGATATCGGTTTCACCATTTCAGAATGGGAGAATGCTCCTGCAATGACTACTGGTAG
AA sequence Show only first row Show all	>Lus10017583 pacid=23155582 polypeptide=Lus10017583 locus=Lus10017583.g ID=Lus10017583.BGIv1.0 annot-version=v1.0 MASLTPLPVTTQFSTEIHTPAAVFQCIGRCSSMLHLVQLHSQIVKLGLSADNDAIGRLIKFCSQSPRGDFNYALKLFDEIPHPDVFIYNTLLTSHIHHRS PFSQSLLLYSQLLQQSFVPNNFTFPSLIKACCNGNDMEAGKQIHAHVLKFGLGSDTCTLNNLIHMYVHFQSLHQARKVFDTMPAHPNSISWVTLISGYTR YGFVDEAFEIFESIPDRNNNTAAWNAILAAYVKTSRFDEAFALFDQMREEKVVIDKFVAATMLSAFTGTGSLEKGKWMHKHILENGIEMDSKLATAIVDM YCKCGCLEIAIEFFNGLSVKHVTSWNAMIGGLAMHGKGDSAIKLFKEMEKLDIAPDRITFVNLLSACAHSGMVNEGRHYFRYMTEKHGIKPRMEHYGCMV DMYGRAGMMKEAREVMEEEMMGKMFPDASVLGAFVGACKKHNEVEMGEGIGKRMVELEPGNSGRYMLLANMYEDAGRYEEVGEVRKVMDESGVKKQAGVS RIELVGGEMREFKAGGRAGKEVYDKVEEMMQRVRYVDKGYNNKEEEEEEGLKGYHSEKLAMAFGLLKTKPGDTLRVSKNLRVCKDCHQVSKLISKIYERE IIVRDRYRFHHFRMGECSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	0	1
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10038795 [exp]	2.8	0.8459
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	2.8	0.8638
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	2.8	0.8431
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	6.0	0.8436
AT2G34460			NAD(P)-binding Rossmann-fold s...		Lus10004936 [exp]	6.3	0.8217
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	8.8	0.8273
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	11.6	0.8183
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	12.0	0.8045
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030837 [exp]	12.2	0.7855
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	12.7	0.8298

Compare expression of checked genes

Lus10017583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.