Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02520 472 / 9e-171 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 469 / 5e-170 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 451 / 2e-162 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT1G78300 445 / 3e-160 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 442 / 7e-159 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT4G09000 436 / 1e-156 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT5G65430 398 / 7e-142 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT5G10450 397 / 1e-141 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT1G26480 360 / 2e-126 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 349 / 2e-122 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033545 [exp] 523 / 0 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10036481 [exp] 459 / 1e-165 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10020940 [exp] 448 / 2e-161 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 432 / 5e-155 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10008715 [exp] 431 / 1e-154 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10035934 [exp] 384 / 4e-136 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 380 / 1e-134 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 376 / 2e-132 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 372 / 7e-131 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101700 [exp] 492 / 6e-179 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.017G113300 [exp] 487 / 8e-177 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.005G162400 [exp] 457 / 4e-165 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 457 / 7e-165 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G157700 [exp] 381 / 4e-135 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 375 / 6e-133 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.001G392200 [exp] 370 / 1e-130 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.011G110900 [exp] 369 / 3e-130 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 360 / 5e-127 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 358 / 5e-126 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10017584 pacid=23155526 polypeptide=Lus10017584 locus=Lus10017584.g ID=Lus10017584.BGIv1.0 annot-version=v1.0 ATGTCGCCATCTGAAGCATCACGTGAAGACAATGTCTACATGGCAAAGTTGGCTGAGCAGGCTGAACGTTACGAGGAGATGGTGGAGTTTATGGAGAAAG TTGCCAAGACAGTGGATGTTGAGGAGCTGACCGTGGAGGAAAGGAACCTACTTTCTGTTGCTTACAAGAACGTGATTGGGGCCAGAAGAGCTTCATGGAG GATTATCTCTTCCATCGAGCAGAAAGAAGAAAGCAGGGGAAATGAGGACCATGTTTCTACTATCAAGGATTACAGGTCTAAGATTGAAACTGAGTTGAGC AAGATTTGTGATGGCATCCTGAACCTTCTTGAGTCGCATCTCATTCCTGCTACCTCCGCTGCTGAGTCTAAGGTCTTTTACCTTAAAATGAAGGGTGACT ACCATAGGTATCTTGCAGAGTTTAAAACTGGAGCTGAGAGGAAGGAAGCTGCTGAGAGCACCTTGTTGGCTTACAAGTCCGCTCAGGATATTGCCCTTGC TGATCTGGCCCCTACCCACCCAATCCGTTTGGGACTGGCACTTAACTTCTCCGTTTTCTACTATGAGATCCTCAACTCACCTGATCGTGCATGCAACCTT GCAAAGCAGGCTTTTGATGAGGCTATCTCTGAGCTGGACACATTAGGGGAAGAATCATACAAGGACAGCACATTGATCATGCAATTGCTCCGTGACAATT TGACACTGTGGACTTCTGATATCACGGATGATGCTGGAGATGAGATCAAGGAAGCATCAACGAAGCCTTCGGGAGAGGGACAACAATAG
AA sequence Show only first row Show all	>Lus10017584 pacid=23155526 polypeptide=Lus10017584 locus=Lus10017584.g ID=Lus10017584.BGIv1.0 annot-version=v1.0 MSPSEASREDNVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSTIKDYRSKIETELS KICDGILNLLESHLIPATSAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLLAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNL AKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDEIKEASTKPSGEGQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02520		GENERALREGULATO...	general regulatory factor 7 (....		Lus10017584 [exp]	0	1
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10039685 [exp]	7.5	0.8101
AT1G48900			Signal recognition particle, S...		Lus10029330 [exp]	8.5	0.7056
AT1G72510			Protein of unknown function (D...		Lus10008118 [exp]	14.4	0.7970
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	15.5	0.8085
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10011506 [exp]	15.9	0.7613
AT5G02380		MT2B	metallothionein 2B (.1)		Lus10024396 [exp]	18.3	0.7069
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	23.4	0.7650
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10017679 [exp]	23.8	0.7631
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	25.3	0.7569
AT5G51910	TCP	TCP19	TCP family transcription facto...		Lus10002963 [exp]	27.3	0.6830

Compare expression of checked genes

Lus10017584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.