Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02530 967 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 956 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 217 / 8e-64 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 188 / 8e-53 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 185 / 5e-52 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 181 / 4e-50 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G18190 168 / 1e-45 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 164 / 4e-44 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 133 / 3e-33 TCP-1/cpn60 chaperonin family protein (.1) AT5G56500 56 / 5e-08 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033546 [exp] 1047 / 0 AT3G02530 1008 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 207 / 6e-60 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 207 / 8e-60 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 201 / 9e-58 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 196 / 3e-56 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 196 / 1e-55 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 196 / 1e-55 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 189 / 3e-53 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10021150 [exp] 186 / 7e-52 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101500 [exp] 1016 / 0 AT3G02530 968 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.017G113601 [exp] 1009 / 0 AT3G02530 972 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 201 / 8e-58 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 201 / 9e-58 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 198 / 1e-56 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 194 / 4e-55 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 185 / 7e-52 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 185 / 1e-51 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 185 / 1e-51 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 183 / 4e-51 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10017585 pacid=23155578 polypeptide=Lus10017585 locus=Lus10017585.g ID=Lus10017585.BGIv1.0 annot-version=v1.0 ATGTCTCTCCGAGTACTGAACCCTAATGCCGAGGTTCTCAACAAATCGGCGGCACTTCACATGAACATTAATGCCGCCAAGGGTTTGCAAGACGTTCTCA AGTCTAATCTCGGCCCTAAAGGCACCATCAAGATGCTTGTTGGCGGAGCTGGAGATATTAAGCTCACTAAGGATGGCAACACTCTCTTAAAAGAAATGCA AATTCAAAATCCAACAGCAATTATGATTGCAAGGACTGCTGTTGCTCAAGATGACATTAGCGGTGATGGTACGACGTCTACTGTGATCTTCATTGGGGAG CTAATGAAACAGTCGGAACGCTACATTGATGAAGGAATGCACCCACGGGTTTTGGTTGATGGCTTTGAAATTGCTAAAAGGGCAACTCTCCAGTTTCTTG AAAAATTTAAGACTCCTGTTGTGATTGGCGATGAACCTGACCGGGAGATTCTAAAGATGGTTGCAAGAACAACAGTGAGAACTAAGCTGTATGAATCATT GGCTGATCAGTTGACCGACATAGTTGTCAATGCGGTTCTCTGCATACGAAAACCTGAAGAATCTATTGATCTATTCATGGTGGAGATTATGCACATGCGT CATAAGTTTGATGTTGATACACGACTGGTTGAAGGTCTCGTCCTCGATCATGGTTCCAGACATCCTGATATGAAGCGACGGGCGGAGAACTGTTTCATCT TGACGTGCAATGTATCTCTGGAATACGATAAGAGCGAAATAAATGCAGGATTTTTCTACTCAAATGCTGAGCAGAGGGAGGCTATGGTTGCTGCTGAAAG ACGTCAAGTTGACGAAAGAGTGAAGAAGATTATTGAATTGAAGGATAAGCTCTGCTCGGGTAATGATAAGAACTTTGTTGTTATTAATCAAAAGGGCATT GACCCTCCATCACTGGATCTTCTGGCACGAGCTGGGATTATTGCTCTTCGAAGAGCAAAGCGTAGGAATATGGAGCGTCTTGTATTGGCTTGTGGTGGAG AGGCTGTTAATTCTGTCGATGATCTGACTCCTGATTGCCTTGGATGGGCTGGTTTGGTTTATGAGCACATCCTTGGTGAAGAAAAGTATACTTTTGTCGA ACAAGTGAAAAATCCTCATTCTTGTACCATCTTGATCAAAGGACCCAATGACCACACAATTGCCCAAATCAAGGATGCTGTCCGAGATGGACTGAGAGCA GTTAAAAATACCATTGAGGATGAAGCTGTTGTTCTTGGAGCTGGAGCTTTTGAGCTTGCGGCCAGAAAATACCTGCTAAGTGAAGTGAAGAAAACTGTTA AAGGGCGTGCCCAACTTGGTGTTGAAGCTTTTGCCGATGCCCTTCTTGTGATACCAAAAACTCTGGCTGAGAACTCTGGACTTGACACCCAGGACGAGAT AGTTGCTCTTACGGGAGAACACGATAGGGACAACATTGTGGGAATGAACCTCCAGACAGGAGGCCCTCTGGATCCCCAAATGGACGGTATATTTGATAAT TACTCGGTTAAACGACAAATTATTAACTCCGGACCTGTGATCGCATCCCAACTCTTGTTGGTTGACGAAGTTATTCGTGCTGGGCGTAACATGAGAAAGC CAACCTAG
AA sequence Show only first row Show all	>Lus10017585 pacid=23155578 polypeptide=Lus10017585 locus=Lus10017585.g ID=Lus10017585.BGIv1.0 annot-version=v1.0 MSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGE LMKQSERYIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVIGDEPDREILKMVARTTVRTKLYESLADQLTDIVVNAVLCIRKPEESIDLFMVEIMHMR HKFDVDTRLVEGLVLDHGSRHPDMKRRAENCFILTCNVSLEYDKSEINAGFFYSNAEQREAMVAAERRQVDERVKKIIELKDKLCSGNDKNFVVINQKGI DPPSLDLLARAGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHILGEEKYTFVEQVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRA VKNTIEDEAVVLGAGAFELAARKYLLSEVKKTVKGRAQLGVEAFADALLVIPKTLAENSGLDTQDEIVALTGEHDRDNIVGMNLQTGGPLDPQMDGIFDN YSVKRQIINSGPVIASQLLLVDEVIRAGRNMRKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02530			TCP-1/cpn60 chaperonin family ...		Lus10017585 [exp]	0	1
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10004649 [exp]	1.0	0.9563
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10017853 [exp]	1.4	0.9542
AT5G64950			Mitochondrial transcription te...		Lus10029199 [exp]	3.3	0.9236
AT5G15610			Proteasome component (PCI) dom...		Lus10030706 [exp]	3.5	0.9358
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10007430 [exp]	3.9	0.9320
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10009545 [exp]	3.9	0.9373
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	4.9	0.9248
AT1G54610			Protein kinase superfamily pro...		Lus10033975 [exp]	5.5	0.9239
AT2G46290			Transducin/WD40 repeat-like su...		Lus10021857 [exp]	6.0	0.9228
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Lus10036393 [exp]	7.7	0.8917

Compare expression of checked genes

Lus10017585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.