Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 329 / 5e-112 ATCXE17 carboxyesterase 17 (.1) AT1G68620 311 / 6e-105 alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 176 / 2e-52 ATCXE20 carboxyesterase 20 (.1) AT5G23530 162 / 6e-47 ATCXE18 carboxyesterase 18 (.1) AT5G27320 159 / 1e-45 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 158 / 3e-45 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 157 / 5e-45 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48700 155 / 2e-44 ATCXE13 carboxyesterase 13 (.1) AT3G05120 153 / 2e-43 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 149 / 4e-42 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033548 [exp] 625 / 0 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10041473 [exp] 227 / 6e-72 AT1G68620 248 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 211 / 3e-66 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 206 / 5e-64 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10036168 [exp] 187 / 1e-56 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 179 / 2e-53 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10012073 [exp] 175 / 4e-52 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10015988 [exp] 174 / 1e-51 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027909 [exp] 173 / 3e-51 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G113700 [exp] 395 / 4e-138 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.004G101400 [exp] 394 / 2e-137 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 336 / 2e-114 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 330 / 3e-112 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 191 / 2e-58 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028300 [exp] 191 / 3e-58 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 190 / 1e-57 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.003G192600 [exp] 183 / 4e-55 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 179 / 7e-54 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 179 / 1e-53 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10017587 pacid=23155458 polypeptide=Lus10017587 locus=Lus10017587.g ID=Lus10017587.BGIv1.0 annot-version=v1.0 ATGGCTTCGGTCTCTTACGACCCAAGGTTCAACCAGCTGATCCACCCACACAACAACAACATAATCAAAGACGAAATCCAAGGCTTACTCAAAGTGTACA AAGACGGCCGGGTCGAAAGACTCCCCGTCGTCCTTACCGTGCCTTGCACGTCATCAGAAGCCGGTGTAGCATCCGCGGATGCTGTGGTCGACAAGTTTTC CAACTTGTGGTGTCGTGTTTATGTTCCAAGTAGTGGTGGTGATCATAAGCTTCCGGTGGTTGTCTACTTCCATGGAGGCGGGTTTTGTGTCGGGTCAGCT GCTTGGAGCTGTTACCATGGATTTCTATCTAGGCTCGCGGCAAGAGCAGGATGCGTCATCTTCTCCGTCGATTATCGACTGGCACCGGAGCACCGCCTTC CTGCTGCCTACGACGATGGCCTCAAAGCTCTTTCTTGGATCCTAAGTGAGGAGAACCGGTCTTCTCAATGGTGGAGTAGGAGATGCAACTTGACAAGCGG CGGCGTGTACCTCGCCGGCGACAGTGCAGGAGCAAACATTGCTTACAACGTAGCCACTACTCTGGCCTCCAAGTACTCATCATCATCTAACGGCTTAAAC AACGTGATCAAGGGAATGATCTTAATCCAACCGTTCTTTGGCGGAGAGGCAAGGACTCCATCCGAGATCAAAAGCATGGCTTATAACTCATCGTCGCCAT TAACTCTCTCTGCTTCCGACACCTATTGGAGGCTGTCTCTTCCCTTCGGCGCCAACCGTGATCATCCTTTCTGCAACCCCATTGGCCATGCCAATAAGCT GCAGCTGCAGCTCCCGCGGACGATGGTTTGCGTGTCGGAGATGGATATTCTGAGGGATAGGAACTTGGAGCTCTGCAACTTCATGAGGAGATATGGGAAT AAGGAAGTTGAGATGATGGTTTATGGAGGAGTTGGCCATGCTTTTCAGATTCTAGACCGTTCCGGTGCCGCTCAGATCAGAGTCCATGAGATGATTTCGC ATATCAGAGCTTTCATTCATCAATGA
AA sequence Show only first row Show all	>Lus10017587 pacid=23155458 polypeptide=Lus10017587 locus=Lus10017587.g ID=Lus10017587.BGIv1.0 annot-version=v1.0 MASVSYDPRFNQLIHPHNNNIIKDEIQGLLKVYKDGRVERLPVVLTVPCTSSEAGVASADAVVDKFSNLWCRVYVPSSGGDHKLPVVVYFHGGGFCVGSA AWSCYHGFLSRLAARAGCVIFSVDYRLAPEHRLPAAYDDGLKALSWILSEENRSSQWWSRRCNLTSGGVYLAGDSAGANIAYNVATTLASKYSSSSNGLN NVIKGMILIQPFFGGEARTPSEIKSMAYNSSSPLTLSASDTYWRLSLPFGANRDHPFCNPIGHANKLQLQLPRTMVCVSEMDILRDRNLELCNFMRRYGN KEVEMMVYGGVGHAFQILDRSGAAQIRVHEMISHIRAFIHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	0	1
					Lus10029758 [exp]	1.0	0.9531
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033737 [exp]	1.4	0.9238
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	2.2	0.7701
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	2.4	0.8569
					Lus10015849 [exp]	7.2	0.7095
AT2G40080		ELF4	EARLY FLOWERING 4, Protein of ...		Lus10028288 [exp]	9.8	0.7797
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	9.9	0.7641
AT1G55790			Domain of unknown function (DU...		Lus10032898 [exp]	12.2	0.6868
					Lus10038304 [exp]	12.6	0.7340
AT1G74400			Tetratricopeptide repeat (TPR)...		Lus10002903 [exp]	13.4	0.7282

Compare expression of checked genes

Lus10017587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.