Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67140 2293 / 0 SWEETIE SWEETIE, HEAT repeat-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033549 [exp] 3745 / 0 AT1G67140 2254 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101250 [exp] 2646 / 0 AT1G67140 2518 / 0.0 SWEETIE, HEAT repeat-containing protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017588 pacid=23155513 polypeptide=Lus10017588 locus=Lus10017588.g ID=Lus10017588.BGIv1.0 annot-version=v1.0 ATGGCGAGGAGTTATGTGAGGGAGAACATACCACTCTCCCGCTTCGGCGTGTTAGTCGCGCAGTTGGAGTCCCTGGTGGCTTCGGCATCTCAGAAACTTC CAGATCCTCTCCTTTGCTTCGATCTGCTCTCTGATCTCATTTCCGCCATAGAAGAAGAGCCACAGGAATCTATTCTTTTATGGCAAAGGAAATGTGAGGA TGCACTGTATGCATTACTTGCTCTCGGAGCAAGGCGACCTGTTCGGCATTTGGCATCAGTAGCAATGGCGAATATAATATCAAAAGGAGATAGTATTTCG ATATACTCCAGAGCAAGTACTCTCCAAGGGTTTCTTGCTGATGGGAAGAAGAATGAGCCTCAGAAAGTTGCTGGTGCTGCACAATGCTTGGGAGAACTAT ATCGGCGTTTTGGAAGAAAAATCACATCAGGTGTCCTTGAAACAACATCAATTGCAACTAAACTAATGAAGTTTAATGAGGAGTTTGTGAGACAAGAGGC TCTCCTTATGCTTCAAAAAGCTTTGGAAGGATCTGGTGGTAGTGCAATGTCTTCAGCATACACTGAAGCATACCGCATTATCACACGCATTGGTGTTGCG GATAAGTCTCCTATAGTGAGAATAGCTGCTGCTCGCTGCCTGAAGGCTTTTGCCAGTGTTGGAGGACCTGGCTTAGGAGCTGCAGAACTTGAGAGTTTGG CGTCTTATTGTGGCAAGGCAAGTCTTCTGGGCCATTTGCTTTTTCCTGTTCAACCCAAGGGAAGAGGTCCTTTCCCCTCTCCAAAGAAATTAGAAGGATG TCTACACAGGCATTTGGCTTTGCCCTTCACAAAAGCTGGTGGTGCTCGATTGAAGGATGTACGAATTGGCGTCACATTGTCATGGGTATCCTTTTTGCAG GTGTTACGTTTAAAGTATTTTTATCCAGATAGCGATCTCCAAAACTATGGCGTGCAGGTTATGGAAATGCTTCGCACAGATAGTTCAGTTGATGCCCATG CATTGGCATGTGTTCTCTATATCCTGCGAGTTGGGGTGACTGATCAGATGACAGAACCTACTCAGAGGGGATTCTTGGTTTTCCTTGGGGAACAGCTCAG GTCCTCTGGTGCCAGTCCTTCAATGAAAATTGCTGCTTTGCGTACCATGTCTTACACCTTGAATACATTGGGTGAGGTTCCTATTGAGTTTAAGGAAGTT TTTGACAATGCAGTTCTCGCTGCAGTATCTCACCCGTTGCAACTGGTGCGTGTTGAGGCTGCTTTGACATTGCGTGTGTTGGCTGAGGTTGATCCTACAT GTGTTGGTGGTTTGGTTTCTTATGGGGTGACCATATTAAGTGCCTTGAGGGAAACGATCTTATTTGGCAAGGGAACTACTGTGAAATCCGAGCTTGATTC TTTACACGGACAAGCTACTGTTTTGGCTGCTCTAGTTGCTGTATCTCCAAAGCTACCTCTAGGTTATCCGGCAAGATTGCCTAATTCTGTGCTTGAAGTG TCCAAAAGGATGCTGACCGAATCTAGTCGGAATCCTACTGCTGCAACTGCTGTGAAGGAGGCTGGTTGGTTGCTTCTGTCGTCACTTTTGTCTTCTATGC CAAAGGAGGAACTTGAAGATCAGGTATTTGATATTCTTTCTTTATGGGCCACACTCTTTAGCAAAAGTCCTGAACAAGAAACTAATCAGGGTGGAGATTT GACATCTAAGATATGTGTGTGGTCTGCTGCTGTTGATGCACTTGCTGCATTTGTAAGATGCTTCATAACATCCAGTAGCACTGACAATGATATTTTGCTT CAGCCAGTTTTGGTTTACCTGAGTAGCGCTCTGTCTTACATATCAGTGCTACAAAGGAAAGATCAATCAAAGATTAAGCCAGCAATGGACATATTCATTA TCAGAACCTTAATGGCTTATCGAACCCTCCCCAACCCAATGGCATTCAAGAGGGATCATACTCAGATGATTCAACTGTGTACAATACCATTTAGAGATCC GTCTAAATATGAGGAAAGCTCCTGCTTGAGGTTACTGTTGGACAAAAAAGATGCGTGGCTGGGACCTTGGATTCCTGCTAGGGATTGGTTGGAGGATGAA CTGCGTGCTTTTCAAGGTGGAGAAGATGGCCTTGTCCCTTGTATATGGGAAAGTGAACTCTCCAGTTTTCCTCAGCCCGAAACGATTGACAAAATGTTAG TGAACCAGATGCTACTCTGCTTTGGTCTCATGTTTTCCACTCAGGAAAGTAACGGAATGCTATCACTTCTTCAAATGATCGAGCAGTGTCTAAAAGCTGG GAGAAAACAGACATGGCATGCAGCCAGTTTGAGCAATATATGTGTGGGCCTCATTGCTGGACTGAAGGCTTTGATTGCACTACGTCCTCAATCGTTAGGA CCTGAGATACTAACTCTAGCACATGCCATCTTTCAGAGTATTCTGGCAGAAGGGGAAATTTGTGCTTCTCAGCGCAGAGCATCGGCAGAAGGTCTCGGTC TTTTAGCTCGCCTTGGGAATGACCTTTTCACTGCCAAAATGACCAGGTCACTTCTTAGTGAACTAGCAATTGCCACAGACTCTAACTATGCTGGATCAAT GGCTTTCGCTCTTGGTTGTATCCACCGCAGCGCAGGAGGAATGGCACTGTCTACTTTAGTGCCTGCATCAGTGGCCTCATTGTCGACGTTAGCCAAAAGT CCCATCACCGGTTTACAGATTTGGTCACTGCATGGACTTCTTTTAACCATTGAAGATGCAGGATTCTCTTATGTATCTCATGTCCAGGCGACACTTGGCC TTGCTACAGATATCCTATTATCTGAAGAAAATGGATTGGTTGACCTTCAACAAGGTGTTGCCCGCCTTATAAATGCCATTGTTGCTGTTCTTGGCCCGGA GCTTGCCCCTGGCAGCATTTTTTTCTCACGCTGCAAGTCTGTCATCGCTGAGATAAGCTCCTGGCATGAGACAGCAACGCTACTCGAGAGCGTTCGCTTC ACTCAGCAACTTGTCCTATTTGCCCCACGAGCTGTTTCGGTGCACTCTCATGTGCAAACTCTTCTCTCCACTTTGTCCTCAAGACAGCCAACCTTAAGAC ATGTTGCTGTCTCCACTCTGAGGCATCTCATTGAAAAGGACCCGGTTTCAGTTATTGATGAACAGATAGAAGATACGTTGTTTCACATGCTAGATGAGGA AACTGATTCTGAGATTGGGAATCTGGTACGTGGCACTATAATGAGATTACTCCGTTCCTCCTGTCCCTCAAAGCCATCCCACTGGATTTCAGTATGTCGT AAAATGGTTCTCGCTACATCAGCAACAAGAGATGTAGAAAGAAATGACTTGGGAAATAATTCTCTTGGTGGTCTAGACAGTGAGTCAAAGCAATATGGAG AGGATGATGAAGATATGGTATCTAACTCCAATGGGACATCTGTACCTGAATATGAATCTGGAACTTCTGCTGAAAATCACAAGAGAATCAAGCAGCTCAG ATATCGGACCAGAGTCTTCGCTGCTGAATGCCTGAGTTGTCTACCTGATGCTGTGGGAAAAAGCACTGCTCATTTTGACCTATCCTTGGCGAGGGGATCA GGTAATGAATCAAGGAATGGGGATTGGCTTGTCTTTCATCTTCAAGATCTAATTTCACTTGCTTATCAGATCAGCACCATCCAGTTTGAGAACATGCGTC CAATTGGCGTGGCACTTTTAAGTACCATCGTGGACAAGTTTGAAGCTGTCTCTGATCCAGAGCTTCCAGGTCACGTTCTCCTGGAACAGTACCAGGCACA ATTAGTATCCGCTGTTCGTACTGCATTAGATGTATCTTCTGGCCCTATACTTCTGGAGGCGGGTCTGCAATTGGCAACAAAGATAATGACGAGTGGGATA CTGGGAGGTGATCAAGTTGCAGTAAAACGGATATTTTTATTAATTTCTCGACCTCTGGATGAATTCAGAGACATATATTATCCTTCATTTGCAGAATGGG TCTCATGCAAGAATTCAAGTATGTTGGGGAAATACTGGATCCATGTGCTGAAGGATTACAGTTACGTTTGCTTGCAATTGAATCTAAAGAAAAAATGGAA TCTCTTTGATGGAATTCAATCCCCTCTGGTATTAGCTCAACTGCAGCCAATTTTGGAAGAAGTCTGGCCAATAATTTTGCAAGCGCTTGCACTGGATGCA GTACCTTCAAATTTTGACGAGGATAATGCATCGAAAAGTAGCTTGATATCAGGTTATACCATGGTTGAATTGGACATGGAAGACTATCATTTTGTTTGGG GATTTGCTCTGCTTGTCCTATTCCAGCGACATCATACTAGCCAGCGTGGAAGAATAATACCAGTAACTTCGTCAAAAGATACACGTGGTCCTGATTCGGT TGTTGATGATAAAACTTTGGTGCCCTGGAAGTTGCATGAAGTAGTACTTCCGGTTTTCCAGTTTCTTTCAACACACAGATTCTTCAGTGCTGGGTTTCAT ACTGTGGATGTTTGCAAAGAATTGCTGCAGGTGGTTTTCTCATATTCTATTTACATGGACAGCTCATGGAAAAGTCTTGCATTATCAGTTCTGTCACAGA TTATCGAGAACTGCCCAACAGATTTCCTTAAAGAAGAAAGTATTGCTAATCTGGTCATTGAACTTATTTTGGTGTACATCTTCAACATTTTCAGAAGTTC TGGAGTTTCTTCAGAGCCTTCAAACTGGGAAGACTTGGCATCTTCAATATTCAATACAGCAAAGACCCTTGTTAGTCGCCTTGACATAAAGATACAGGGT CAATTGAAGCCTACAGTGTTGGCATTCACAATAATCAGCTGCAAATGTGTTAGAGAAGCAACAAGCGAGGTGTACTTTTCAACAATCAAAGATTTTTCTA AGTCTACTAGTCCCTTGCTGAAGGCCCTTGTCAAAGATTCTTTGAAACAAGGAGATGACTGTCTGAGAGCTTTCCTGGGAATCTCTCAGCACACTATTAG CGCACTGACCAAGGATTGCATCAAGGGCTTGCATCTTCTGAAGGATAGGAGCTCTGAATTACGCAAGCTACTTCAATTGAAGCTTTGTTTCTCTATTGAG CAAATTGTATTGATTGCCAAACTAGCTTACGAGTTTTGCCATGTCGAAGAAGTAGCAGAAAAAAATTCCACCTGCCTCTCAGTCTTCAGGCGTTGTACCG ACTGTCTCCACATCGTGCTCAGTGATTCCGATCTGCAGGTACAAGTAATTGGACTACAAGTGCTGAAGAGTCTCGTACAAAAGAGCAGCAATGTAGATGA CAGAGCATTCCTCGTACTTCTCAGCGGAGAAGTTATCAGGGATGTTTTCACAATAATTCAGACAATGTTGAAGAAACCTGTAAGTAAAGAATCAGTTGCC GTCCTTCCCGACTGCTTGAGATTCCTGCTGCTTCTGCAAACTCTCTCAACATCCAGTGAAAGTCAAAGAAGCTCGATGGTTTTATTTCTAAGTGCTGTTA TTACGATCTTTTTGTCAGCTGAGGATGAGTATTCACAGGAGCTTGATGATGTGAAAGGCTTAGCTGTTAAGCTGGTGTCCCAAGTTGCTCAAATTCCTTC ATCCGCTGCCCACTTTAAGGACGTCTTATTATCTATGTCCGTAGCACATCGGCAGCTGCTCCAGGGAATTATTCGTGCATCAGTAACGCAGGATCAGAAT GCCTCTCCGTCAAAGTCGGTAGCCCCATTGGAAATAAAATTACCATTGCCAAAAGATTCCTTTCAGCCGTCACCTGTGAAACTACCAGAAACAAGTCCTG CAAAATCTTCTGTACCTGCTGAAGCTTCTGTTCATGATCAGAGCGAAGACGTCACAGAAGAGGATGACGACGAGGACGAAGATGATGATGACTGGGATGC TTTCCAGTCAATCCCTGCCTCCAGCAATGTCGCTGTGGATGAATCAAAGCCAGACAATAGTGATACCGAAGAACTTCGTAGAGAAATCGAATCCGATAAT GAAGCATCTCAATCTAGCATTGATGGTAAAGAAACCGGCATATTGGGTGATGACGAGTCTAGTACTGCAGAAATGAGTCCCATCATCCGGGCAGGCGAGG ATGTGGATAATCCCCATAATCTTCTGTCTGTTGAAGAAGGATCCGGTGATCTGGAAGTAGAATACCAGCAGGATATACAGAACCAAAGCAATGCTGCAGA GCTGACGGTAGACTCACCACACAGGAAACACTCGGACGGTGAAGGTCAGCTTGAAGAAAGTAACAAAGACAAGCACGATGAAGCTGAAGATACCGAGTAC GCATTAGTAACAACGGATGAGAACAAGGGCAATGACATCAATCAAAATAACAACGATAGTACGAGATTGCCTAAAGAGAAAGATCAGGAACCGGAGAGTC AGTCTGACAGCCGGTCGCCTCCGGAAACTGAGGAAGTTGAGAGGGCTACCTGA
AA sequence Show only first row Show all	>Lus10017588 pacid=23155513 polypeptide=Lus10017588 locus=Lus10017588.g ID=Lus10017588.BGIv1.0 annot-version=v1.0 MARSYVRENIPLSRFGVLVAQLESLVASASQKLPDPLLCFDLLSDLISAIEEEPQESILLWQRKCEDALYALLALGARRPVRHLASVAMANIISKGDSIS IYSRASTLQGFLADGKKNEPQKVAGAAQCLGELYRRFGRKITSGVLETTSIATKLMKFNEEFVRQEALLMLQKALEGSGGSAMSSAYTEAYRIITRIGVA DKSPIVRIAAARCLKAFASVGGPGLGAAELESLASYCGKASLLGHLLFPVQPKGRGPFPSPKKLEGCLHRHLALPFTKAGGARLKDVRIGVTLSWVSFLQ VLRLKYFYPDSDLQNYGVQVMEMLRTDSSVDAHALACVLYILRVGVTDQMTEPTQRGFLVFLGEQLRSSGASPSMKIAALRTMSYTLNTLGEVPIEFKEV FDNAVLAAVSHPLQLVRVEAALTLRVLAEVDPTCVGGLVSYGVTILSALRETILFGKGTTVKSELDSLHGQATVLAALVAVSPKLPLGYPARLPNSVLEV SKRMLTESSRNPTAATAVKEAGWLLLSSLLSSMPKEELEDQVFDILSLWATLFSKSPEQETNQGGDLTSKICVWSAAVDALAAFVRCFITSSSTDNDILL QPVLVYLSSALSYISVLQRKDQSKIKPAMDIFIIRTLMAYRTLPNPMAFKRDHTQMIQLCTIPFRDPSKYEESSCLRLLLDKKDAWLGPWIPARDWLEDE LRAFQGGEDGLVPCIWESELSSFPQPETIDKMLVNQMLLCFGLMFSTQESNGMLSLLQMIEQCLKAGRKQTWHAASLSNICVGLIAGLKALIALRPQSLG PEILTLAHAIFQSILAEGEICASQRRASAEGLGLLARLGNDLFTAKMTRSLLSELAIATDSNYAGSMAFALGCIHRSAGGMALSTLVPASVASLSTLAKS PITGLQIWSLHGLLLTIEDAGFSYVSHVQATLGLATDILLSEENGLVDLQQGVARLINAIVAVLGPELAPGSIFFSRCKSVIAEISSWHETATLLESVRF TQQLVLFAPRAVSVHSHVQTLLSTLSSRQPTLRHVAVSTLRHLIEKDPVSVIDEQIEDTLFHMLDEETDSEIGNLVRGTIMRLLRSSCPSKPSHWISVCR KMVLATSATRDVERNDLGNNSLGGLDSESKQYGEDDEDMVSNSNGTSVPEYESGTSAENHKRIKQLRYRTRVFAAECLSCLPDAVGKSTAHFDLSLARGS GNESRNGDWLVFHLQDLISLAYQISTIQFENMRPIGVALLSTIVDKFEAVSDPELPGHVLLEQYQAQLVSAVRTALDVSSGPILLEAGLQLATKIMTSGI LGGDQVAVKRIFLLISRPLDEFRDIYYPSFAEWVSCKNSSMLGKYWIHVLKDYSYVCLQLNLKKKWNLFDGIQSPLVLAQLQPILEEVWPIILQALALDA VPSNFDEDNASKSSLISGYTMVELDMEDYHFVWGFALLVLFQRHHTSQRGRIIPVTSSKDTRGPDSVVDDKTLVPWKLHEVVLPVFQFLSTHRFFSAGFH TVDVCKELLQVVFSYSIYMDSSWKSLALSVLSQIIENCPTDFLKEESIANLVIELILVYIFNIFRSSGVSSEPSNWEDLASSIFNTAKTLVSRLDIKIQG QLKPTVLAFTIISCKCVREATSEVYFSTIKDFSKSTSPLLKALVKDSLKQGDDCLRAFLGISQHTISALTKDCIKGLHLLKDRSSELRKLLQLKLCFSIE QIVLIAKLAYEFCHVEEVAEKNSTCLSVFRRCTDCLHIVLSDSDLQVQVIGLQVLKSLVQKSSNVDDRAFLVLLSGEVIRDVFTIIQTMLKKPVSKESVA VLPDCLRFLLLLQTLSTSSESQRSSMVLFLSAVITIFLSAEDEYSQELDDVKGLAVKLVSQVAQIPSSAAHFKDVLLSMSVAHRQLLQGIIRASVTQDQN ASPSKSVAPLEIKLPLPKDSFQPSPVKLPETSPAKSSVPAEASVHDQSEDVTEEDDDEDEDDDDWDAFQSIPASSNVAVDESKPDNSDTEELRREIESDN EASQSSIDGKETGILGDDESSTAEMSPIIRAGEDVDNPHNLLSVEEGSGDLEVEYQQDIQNQSNAAELTVDSPHRKHSDGEGQLEESNKDKHDEAEDTEY ALVTTDENKGNDINQNNNDSTRLPKEKDQEPESQSDSRSPPETEEVERAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	0	1
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	1.4	0.9485
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	2.8	0.9356
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10009803 [exp]	2.8	0.9588
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	3.9	0.9282
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	6.2	0.9445
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	7.0	0.9382
AT3G55480		AP-3beta, PAT2	beta-subunit of adaptor protei...		Lus10023408 [exp]	7.9	0.9175
AT2G48060			unknown protein		Lus10008175 [exp]	8.2	0.8962
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	10.2	0.9441
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10017680 [exp]	11.0	0.9243

Compare expression of checked genes

Lus10017588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.