Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02280 758 / 0 Flavodoxin family protein (.1) AT4G30210 219 / 3e-62 AR2, ATR2 P450 reductase 2 (.1.2) AT4G24520 184 / 9e-50 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT3G24710 76 / 5e-17 unknown protein AT1G30510 54 / 1e-07 ATRFNR2 root FNR 2 (.1.2.3) AT5G66190 53 / 2e-07 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 52 / 7e-07 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT4G05390 50 / 4e-06 ATRFNR1 root FNR 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015525 [exp] 224 / 3e-64 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 215 / 6e-61 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10033550 [exp] 196 / 1e-59 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10006972 [exp] 194 / 2e-53 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 184 / 5e-52 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10032842 [exp] 144 / 4e-36 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10002416 [exp] 117 / 8e-29 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10023266 [exp] 55 / 9e-08 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10038538 [exp] 55 / 1e-07 AT4G05390 624 / 0.0 root FNR 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101100 [exp] 808 / 0 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.005G153800 [exp] 229 / 5e-66 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 229 / 8e-66 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 223 / 1e-63 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106566 [exp] 169 / 9e-48 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.011G027100 [exp] 137 / 4e-38 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1) Potri.002G106632 [exp] 62 / 3e-10 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.005G112900 [exp] 54 / 1e-07 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.007G057200 [exp] 53 / 3e-07 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 49 / 8e-06 AT4G05390 635 / 0.0 root FNR 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10017589 pacid=23155556 polypeptide=Lus10017589 locus=Lus10017589.g ID=Lus10017589.BGIv1.0 annot-version=v1.0 ATGGGAGAGGATTCTAGAAAACCGGTGCTAGTACTATATGCTAGTCAAACGGGGAATGCCCTCGACGCCGCGGAGCGTGTTGGCCGCGAGGCAGAGCGCA GAGGCTGCCCCATCGTTCTCCGTTCCACTGACGAATTCGACGCCAGTGGTTTACCTCGCGAGGACACTGTAATTTTTGTTGTTTCTACCACAGGGCAGGG AGATGCCCCAGATCCCATGAAGGCCTTTTGGAGGTTTCTTCTACAGAAAAGTCTTCCCAAGTCTTGGCTGCAAGGAGTTCACTATGCTGTCTTTGGATTG GGTGACTCTGGTTACCAGAAGTTCAATGTATTCTTCTACACTTTTGTTGGGAAGAAGCTGGATAGAAGACTTTATGATCTTGGGGCAAGTGCTCTTGTTG AAAGAGGTCTGGGAGATGATCAGCATCCTTCAGGATACGAAGGTGCTTTGGATCCTTGGATGACATCCTTATGGCATGCCCTGCATCAAATGTATCCTAC ATTCTTTCCACATGGTCCAGATTATGTTCCTCCAACTGTAGAATTGCTTGATCAACCCAAATATGAAGTTATCTTTCATAAACTAGACGAGATGCTACCT ATGCTCTCAGAAACTACAGATTCTGAAAATCTTGCAATAGAGATTGAGAGGGCTCGATCCATGTCTCCTGGAAAACTTTCATGTGACGGGAGTACTCCTG CTACATTTCTGAAAATGATCAGGAATGACCCACTGACTAAGACAGGATGTGCGAAAGATGTGCGTCATTTTGAATTTGAATTTATTTCACCTACGATTAA ATATGATGTTGGTGATGTCCTTGAAGTTCTGCCCAGTCAAATTCCTGTTTCTGTGGATTCGTTCATACGACGTTGCAATTTGGACCCTGAAGCACTTATC ACTGTATGCCCCAAGCAGCGGGAGAATCACCTTCTTGATGGCCTTAAAAGAAGTCAAGAAATACCCGTTATGAGCTTCTTTGCGTCTGCAGAACATGAAA AGGAGCGACTTCAGTATTTCGCATCTGCTGATGGTAGAGATGATTTGTACCAATACAACCAGAAAGAAAGGCGAACAGTTCTCGAGGTTCTAGAGGATTT CCCGTCTGTGCAAATTCCATTTGAATGGCTGGTAGAGTTGGTTCCACCATTGAAAAAACGAGCTTTCTCCATTGCCTCTTCTCCTTCCGCCCATCCCAAC CAAGTTCACTTGACTGTGAATATAGTCTCATGGACGACACCTTTTAAGAGGAAGCGGAATGGTCTCTGCTCAACATGGTTAGCCAGTCTTGATCCTCTAC AAGGGGTAAGAATTCCAGCATGGTTCCACAAAGGTTGCCTTCCTGCACCACCTCCGTCGCTGCCACTCATACTCGTCGGCCCCGGGACCGGCTGCGCACC TTTCCGTGGATTTCTGGAAGAAAGAGCGATGCAAGAGGCATCGTCCGATTCACCTGTTGCTCCCATCATGTTCTTCTTTGGCTGCAGAAGTCGAGACGAC GATTTCTTATACAGGGACTTGTGGCTGTCCCACTCGGAACCGGATGATGGATTGCTTTCGGAAGAAAGAGGCGGAGGCTTCTACGTTGCATTTTCGAGAG ACCAGGATCGAAAGATTTACGTGCAGCATAAGATGTTGGAACAGAGCCGGAGGATATGGAAGATGGTTTCGGAAGGTGGTGCTGCAGTGTATGTAGCTGG CTCCTCGACGAAAATGCCGTCCGATGTGATGTCGGCTGTGGAAGAGATCGTGGCGAGAGAGGGTGGAGTGCCGAAAGAGACGGCTGCAACGCTGATAAGG AGGTTGGAGAGAGATGGTAAATACCATGTTGAAGCATGGTCTTGA
AA sequence Show only first row Show all	>Lus10017589 pacid=23155556 polypeptide=Lus10017589 locus=Lus10017589.g ID=Lus10017589.BGIv1.0 annot-version=v1.0 MGEDSRKPVLVLYASQTGNALDAAERVGREAERRGCPIVLRSTDEFDASGLPREDTVIFVVSTTGQGDAPDPMKAFWRFLLQKSLPKSWLQGVHYAVFGL GDSGYQKFNVFFYTFVGKKLDRRLYDLGASALVERGLGDDQHPSGYEGALDPWMTSLWHALHQMYPTFFPHGPDYVPPTVELLDQPKYEVIFHKLDEMLP MLSETTDSENLAIEIERARSMSPGKLSCDGSTPATFLKMIRNDPLTKTGCAKDVRHFEFEFISPTIKYDVGDVLEVLPSQIPVSVDSFIRRCNLDPEALI TVCPKQRENHLLDGLKRSQEIPVMSFFASAEHEKERLQYFASADGRDDLYQYNQKERRTVLEVLEDFPSVQIPFEWLVELVPPLKKRAFSIASSPSAHPN QVHLTVNIVSWTTPFKRKRNGLCSTWLASLDPLQGVRIPAWFHKGCLPAPPPSLPLILVGPGTGCAPFRGFLEERAMQEASSDSPVAPIMFFFGCRSRDD DFLYRDLWLSHSEPDDGLLSEERGGGFYVAFSRDQDRKIYVQHKMLEQSRRIWKMVSEGGAAVYVAGSSTKMPSDVMSAVEEIVAREGGVPKETAATLIR RLERDGKYHVEAWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02280			Flavodoxin family protein (.1)		Lus10017589 [exp]	0	1
AT1G03910			unknown protein		Lus10035558 [exp]	15.5	0.8535
AT5G53440			unknown protein		Lus10005006 [exp]	17.1	0.7828
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10022356 [exp]	25.2	0.8079
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	34.2	0.8307
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	38.8	0.8390
AT1G29220			transcriptional regulator fami...		Lus10029237 [exp]	41.2	0.8196
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	47.5	0.8272
AT5G53440			unknown protein		Lus10019025 [exp]	49.7	0.7654
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Lus10004474 [exp]	63.8	0.8239
AT1G11480			eukaryotic translation initiat...		Lus10039708 [exp]	84.6	0.8197

Compare expression of checked genes

Lus10017589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.