Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15760 115 / 5e-33 Ribosomal protein PSRP-3/Ycf65 (.1) AT1G68590 112 / 1e-31 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033551 [exp] 264 / 2e-91 AT5G15760 115 / 3e-33 Ribosomal protein PSRP-3/Ycf65 (.1) Lus10034302 [exp] 117 / 1e-33 AT1G68590 173 / 2e-55 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10021693 [exp] 116 / 3e-33 AT1G68590 178 / 9e-58 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10041469 [exp] 116 / 3e-33 AT1G68590 175 / 2e-56 Ribosomal protein PSRP-3/Ycf65 (.1.2) Lus10035036 [exp] 115 / 4e-33 AT1G68590 181 / 9e-59 Ribosomal protein PSRP-3/Ycf65 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101000 [exp] 129 / 1e-38 AT1G68590 136 / 3e-41 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.010G127300 [exp] 127 / 3e-37 AT1G68590 188 / 2e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2) Potri.008G118700 [exp] 122 / 2e-35 AT1G68590 187 / 4e-61 Ribosomal protein PSRP-3/Ycf65 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04839 [flax] [poplar] PSRP-3_Ycf65 Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
Representative CDS sequence Show only first row Show all	>Lus10017590 pacid=23155462 polypeptide=Lus10017590 locus=Lus10017590.g ID=Lus10017590.BGIv1.0 annot-version=v1.0 ATGGGAGTCCAGCTAAACCCAACGCATACCTCTCTTAAACCCTTATCCCAATTCCCTCCTTCTTCCCCTCAACACTCACAAGCACGATTCCTACTCTTTC TCCTCAGTAAACCAATCCTCATACGCACACCCATTCCCGCCATACCAAAACTCAAGCTTTCAGCATCGCCAGCTGAGCAGGTTGTGCCTAGCCAGATAGA CGCATCCGCGTCTAAACAGAAACTCAGAGTAGTAGTGAAGCCAATGGAGAAACCAAGGATAGTGTTGCAGTTCCTGTGGAAGGAAGACGTAATCGGTGTG GCGTTGAACCAAGTGATACCCAGACATGGTACAATTCCTTTAACGCCTTACCATTTTTGGCCTCATCAAGACGCATGCGAGGAGCTTAAGGTGTTTCTGA AGAGCAAGCCATGGATTAGCCACAAGCAAATGAGAATCCTTTTAAATCAGCTCACGGAACTCATCAACTCCTCTGGGAAAAACGCGAGTGACACTGTGAG TTAA
AA sequence Show only first row Show all	>Lus10017590 pacid=23155462 polypeptide=Lus10017590 locus=Lus10017590.g ID=Lus10017590.BGIv1.0 annot-version=v1.0 MGVQLNPTHTSLKPLSQFPPSSPQHSQARFLLFLLSKPILIRTPIPAIPKLKLSASPAEQVVPSQIDASASKQKLRVVVKPMEKPRIVLQFLWKEDVIGV ALNQVIPRHGTIPLTPYHFWPHQDACEELKVFLKSKPWISHKQMRILLNQLTELINSSGKNASDTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15760			Ribosomal protein PSRP-3/Ycf65...		Lus10017590 [exp]	0	1
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10030559 [exp]	20.9	0.8372
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	23.8	0.8447
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	38.5	0.8350
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10003436 [exp]	46.7	0.7961
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	50.5	0.8314
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	51.5	0.8280
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Lus10009255 [exp]	52.9	0.8299
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10024852 [exp]	55.3	0.7979
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	55.9	0.8306
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	60.0	0.8209

Compare expression of checked genes

Lus10017590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.