Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13340 173 / 2e-50 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 137 / 1e-36 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 138 / 4e-36 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 126 / 2e-33 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 120 / 1e-29 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 115 / 4e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G79910 87 / 6e-19 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 87 / 7e-19 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 79 / 1e-15 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 71 / 1e-13 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033553 [exp] 364 / 3e-125 AT1G13340 107 / 6e-26 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041468 [exp] 208 / 2e-63 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 206 / 1e-62 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 203 / 2e-62 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10017591 [exp] 157 / 4e-46 AT1G13340 158 / 3e-46 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 138 / 1e-36 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 138 / 1e-36 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 137 / 2e-36 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 134 / 2e-35 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G127000 [exp] 221 / 2e-68 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 207 / 5e-65 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 203 / 7e-60 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 146 / 3e-39 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G117100 [exp] 140 / 3e-37 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 134 / 2e-36 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 134 / 4e-35 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 129 / 1e-32 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 99 / 2e-22 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.013G135700 [exp] 98 / 3e-22 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10017592 pacid=23155460 polypeptide=Lus10017592 locus=Lus10017592.g ID=Lus10017592.BGIv1.0 annot-version=v1.0 ATGGCGATGAAGAAGAAGCTGGACGCTCTGTTGGGGAGATCTTTCAAAAGCTCGAGGTTCAAACACCTGGCAGGTTTGGTCATCGCCCGGATCTCGCACT TCGAGAAGCAGCACAAGTCCCGCTGCTCCCAGGCTCGCCGCGATGTCTCTCAGCTCCTCCTCGACGGCCACCTCGAACGCGCTCTCCAACGCGTTGAGTA TGCGATCAGGGAGCAGAACATGCTGGATTCCTATGCCATGATCGACAACTACTGCCATCTCCTTAGTGAAAGGCTCGTCGTTATCGAGACCAATTATTCC AAGGAATGTCCAGATGAGCTGAAGGAGGCAATAGCAAGTTTGATCTTTGCGGCGGCGAGGTGTGGGGAATTGCCGGAGCTTCAAGAGATGAAAAGGCTCT TCAGTTGTAGATACGGCAAGGAATTCACCACTCGCGCCGCTGAAATGCGGAATAACTGTGGAGTCCACCCAAGGATTGCAAAGAAGCTGTCGACCAAGCA ACCAAGCCTGGAAAGCAAAATCAGTGCCCTAAAGGAAATAGCTCCAAAATGTGAACTCATCCCACACTTAGATGAAGTGGCCTCTTCACTCCCCAAATCA CCACCTGCTAGCAGTCATAATTCTCATCATCACCACGCCATTGTAGTTGACGAGACGCACGAGCACGACTCGGCTGCATCCCCTGCACGGTTTGGTCCGA CACCATCGAGGAGCTACTCCGATAGGTACCCAGATTTCGAGGCTGCAGTCCACGCAGCCTGTGAGCTATCAGCTCAGGCCGCGGCTGCAGCCAGAGCTGC CATGGAGCTCTCTTCTAGGCCTCCCACTAATGACGACGATGATTCGAGTTCGGATAGGAATAATAATGGTGTTAGTTCAGCATTGAAGTTATTGAGGAGG AGCAATACTACTGCTAGTGGTTTTGATGCCAATGGAAAATCTAGGGTTGTTGTGTCATCATCATCGGACTATGTTCCCAAGTTGTTCAAGAGAAGTTCTA GTACCGTTACAACAGTGTTCGATCTTCACCCTCCGAATGTTAGAAGGTGA
AA sequence Show only first row Show all	>Lus10017592 pacid=23155460 polypeptide=Lus10017592 locus=Lus10017592.g ID=Lus10017592.BGIv1.0 annot-version=v1.0 MAMKKKLDALLGRSFKSSRFKHLAGLVIARISHFEKQHKSRCSQARRDVSQLLLDGHLERALQRVEYAIREQNMLDSYAMIDNYCHLLSERLVVIETNYS KECPDELKEAIASLIFAAARCGELPELQEMKRLFSCRYGKEFTTRAAEMRNNCGVHPRIAKKLSTKQPSLESKISALKEIAPKCELIPHLDEVASSLPKS PPASSHNSHHHHAIVVDETHEHDSAASPARFGPTPSRSYSDRYPDFEAAVHAACELSAQAAAAARAAMELSSRPPTNDDDDSSSDRNNNGVSSALKLLRR SNTTASGFDANGKSRVVVSSSSDYVPKLFKRSSSTVTTVFDLHPPNVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13340			Regulator of Vps4 activity in ...		Lus10017592 [exp]	0	1
					Lus10019746 [exp]	3.9	0.6532
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	23.5	0.6291
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10034242 [exp]	36.0	0.4992
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10013013 [exp]	53.4	0.4990
AT3G02210		COBL1	COBRA-like protein 1 precursor...		Lus10033047 [exp]	55.0	0.5061
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	57.1	0.5020
					Lus10001078 [exp]	69.7	0.5056
AT5G39020			Malectin/receptor-like protein...		Lus10008333 [exp]	72.2	0.5031
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10037385 [exp]	77.2	0.4876
AT5G57750			RING/U-box superfamily protein...		Lus10016542 [exp]	92.3	0.4838

Compare expression of checked genes

Lus10017592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.