Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38460 604 / 0 ALG6, ALG8 glycosyltransferase family (.1.2) AT2G44660 102 / 7e-23 ALG6, ALG8 glycosyltransferase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033554 [exp] 126 / 4e-34 AT5G38460 127 / 2e-35 ALG6, ALG8 glycosyltransferase family (.1.2) Lus10043344 [exp] 110 / 2e-25 AT2G44660 725 / 0.0 ALG6, ALG8 glycosyltransferase family (.1) Lus10019495 [exp] 104 / 2e-23 AT2G44660 717 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114100 [exp] 626 / 0 AT5G38460 595 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2) Potri.004G100500 [exp] 616 / 0 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2) Potri.014G053200 [exp] 102 / 5e-23 AT2G44660 669 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF03155 [flax] [poplar] Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence Show only first row Show all	>Lus10017594 pacid=23155554 polypeptide=Lus10017594 locus=Lus10017594.g ID=Lus10017594.BGIv1.0 annot-version=v1.0 ATGGGGAGGAAGGACGGGAGAAAGGTGGAAAAAGAAAACATTGAACTGAATAACAACAACAACAATGCTGATATCTGCCTGTGGTTGTCGAACAAAGGAC TCACTCCCTTGTTCATGTGTATTTCTATTCTCGGGCTGTTGGTACGATTGACTGTAGCATTACATTCATACTCTGGTGCTGGAAACCCCCCAAAGTTTGG AGACTATGAAGCACAGAGACATTGGATGGAGATCACCACAAACCTTCCAGTTCAATCTTGGTACCTCAACAGCACTGAGAATGATTTAAGTTACTGGGGC CTTGATTACCCCCCTCTTACTGCCTATCAAAGCTACGTTCATGGTCTTTTTCTCAGATTTGTTGAACCCAAATCGGTTTCTCTTCTTGCCTCGCGTGGTT ATGAATCATATATTGGGAAGCTACTCATGAGATGGACGGTTCTATCTTCTGATCTCCTGATATTCTTTCCAGCAGTCCTCTGTTTTCTTCGTGCCTATTA TGACCTTAAATCAAACGGTCGTAAAGTTGATGTTGCACAGCACATCGTAATTATTCTAATCAACCCGTGCTTGGTGCTGATTGACCATGGCCATTTTCAG TATAACTGCATCAGCTTGGGCCTCGCCTTGGCTGCTGTTGCTGCCATTCTCTCTCAAAAAGACCTAATAGCATGCGTTCTATTTTGTCTGTCTTTAAACC ACAAACAGATGAGTGCATATTTCGCACCCGCCTTTTTCAGCCACTTGTTGGGTAAGTGCCTGAGACGGAAACATCCATTGGTTGAAATTTCAAAATTGGG TTTGGTGGTCCTGGGAACTTTTGCCATTGTTTGGTGGCCCTATCTTCATTCCAAAGATGCTGCCTTACAGGTTCTCTCCCGTCTTGCTCCTTTCGACAGA GGGATATACGAGGACTATGTAGCCAACTTTTGGTGCACTTCTTCTGTTGTCATCAAGTGGAAGAGATTATTTCCCACTTCGTCACTTAGACTTTTCAGCT TGGTTGCCACAATTTTAGCCTGTCTGCCTTCAATGATTCAGCAAATGTTGGCTCCCAGCAGCAAAGGATTCCTTTACGGGCTGCTGAATAGTTCTCTCTC GTTTTACTTATTTTCGTTCCAAGTCCATGAGAAGTCTATCCTACTGCCGCTTCTTCCTGCAACACTCCTGGCAATGGAGTTTCCTGATCAGTTCAAGATA TTACTCCACTACGCGCTGTTTTCAATGTTCCCTCTAGTATGCCGAGACAATTTGATCCTACCGTATATTGCTCTGTATGCTCTCTGTATCTTCCTCTACA AAGCACCCGATGGAAGATGGGACGCTAAGAAGCAACGATCCTCCACTCTCTTGTTAGTCGCCATTGCCTCGAACTTCTCTTATATGTCCTCCATGGTGCT TCAGGTAGTGTACTTGACTGTCAATCCTCCAGAGAGGTACCCTTTTCTTTTCGAGGCACTGATTATGCTTCTGTGCTTCTCTCAATTTGTTCTGTTTGCT TTGCACACGAACACCAAGCAATGGATGTTGTCTGGCCACTTGAAATCAAGTGATAAGCGGAAGAAACAACTGTGA
AA sequence Show only first row Show all	>Lus10017594 pacid=23155554 polypeptide=Lus10017594 locus=Lus10017594.g ID=Lus10017594.BGIv1.0 annot-version=v1.0 MGRKDGRKVEKENIELNNNNNNADICLWLSNKGLTPLFMCISILGLLVRLTVALHSYSGAGNPPKFGDYEAQRHWMEITTNLPVQSWYLNSTENDLSYWG LDYPPLTAYQSYVHGLFLRFVEPKSVSLLASRGYESYIGKLLMRWTVLSSDLLIFFPAVLCFLRAYYDLKSNGRKVDVAQHIVIILINPCLVLIDHGHFQ YNCISLGLALAAVAAILSQKDLIACVLFCLSLNHKQMSAYFAPAFFSHLLGKCLRRKHPLVEISKLGLVVLGTFAIVWWPYLHSKDAALQVLSRLAPFDR GIYEDYVANFWCTSSVVIKWKRLFPTSSLRLFSLVATILACLPSMIQQMLAPSSKGFLYGLLNSSLSFYLFSFQVHEKSILLPLLPATLLAMEFPDQFKI LLHYALFSMFPLVCRDNLILPYIALYALCIFLYKAPDGRWDAKKQRSSTLLLVAIASNFSYMSSMVLQVVYLTVNPPERYPFLFEALIMLLCFSQFVLFA LHTNTKQWMLSGHLKSSDKRKKQL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10017594 [exp]	0	1
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10001675 [exp]	2.2	0.9235
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	8.4	0.9170
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	9.5	0.9128
AT4G38040			Exostosin family protein (.1)		Lus10012723 [exp]	11.2	0.8786
AT1G26460			Tetratricopeptide repeat (TPR)...		Lus10026663 [exp]	11.7	0.8893
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	14.7	0.8961
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	14.7	0.8891
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	14.8	0.8857
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	16.6	0.8978
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	16.6	0.8982

Compare expression of checked genes

Lus10017594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.