Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38450 683 / 0 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT1G67110 669 / 0 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1) AT2G46950 332 / 2e-107 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 322 / 4e-104 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT2G26710 315 / 1e-101 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14640 314 / 4e-101 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14690 310 / 7e-100 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14660 307 / 2e-98 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14680 306 / 5e-98 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14610 305 / 9e-98 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033555 [exp] 952 / 0 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10025756 [exp] 329 / 1e-106 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10033044 [exp] 326 / 2e-105 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10039234 [exp] 321 / 6e-104 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10008423 [exp] 315 / 2e-101 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10025755 [exp] 328 / 7e-101 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10010821 [exp] 314 / 7e-101 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10016310 [exp] 312 / 3e-100 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 309 / 4e-99 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114200 [exp] 757 / 0 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 729 / 0 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 337 / 2e-109 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 327 / 3e-106 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 325 / 2e-105 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.012G142000 [exp] 325 / 2e-105 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.005G035200 [exp] 323 / 5e-105 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 322 / 3e-104 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 318 / 1e-102 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G022200 [exp] 315 / 1e-101 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10017595 pacid=23155553 polypeptide=Lus10017595 locus=Lus10017595.g ID=Lus10017595.BGIv1.0 annot-version=v1.0 ATGGCGGTTTTGACTCCAACCATCACTGTACTGCTCGGACTCGGCCTTATACTAGCAGCGAAGATTGTGTACGACACCTTCACATGCTACTATCTCACCC CGAAACGCATCAAACTCTTCATGGAACGGCAAGGAATTCGTGGGCCCAAACCCCGGCCGCTGATCGGAAACATCCCCGACATGTCGTCATTAATCTCGCA GTCAACCGCCAAGGACTGCCACCACCTCCACCACGACATCGTCCCTCGCCTGCTCCCCCATTTCGTCCTCTGGTCCAAGCAATACGGGAAGAGATTCATA TATTGGAATGGGATTGAGCCGAGGATGTGCTTGACGGAACCGGAACTCATCAAGGAATTAATGACGAAATACAGCACCAAAGCAGGGAAATCATGGATGC AACAGCAGGGCTCCAAGCATTTCATCGGCCAAGGTCTGTTAATGGCGAATGGAGAGAATTGGCACCACCAGCGCCACGTCATTGCTCCTGCATTCATGGG AGAGAAGCTTAAGAGCTATGCAGTGCATATGGTGGAATGCACGCAGAAGATGATGCAGTCGATGGAGGCTGAAATGAAAGGATCGAAGAATTTCGAGGTG GAGATTGGTGAATACATGACGAAGCTGACGGCTGATATAATTGCTAGGACTGAATTCGATTCGAACTACGAGAAAGGGCAGAAGATTTTCCATCTGCTCA CTGTTCTTCAGCAACTATGTGCTCAGGCTTCAAGGCACCTCTGCTTCCCCGGTAGCCGGTTTCTGCCAAGCAAGTACAACAGGGAGATAAAGACGCTGAA GACGGAGGTGGAGAGGCTACTGATGGAGATAATACAGATCCGGAAAGACGGAGCGGAGATCGGCCGGAGCTGTTCCTACGGCAACGATCTGCTGGGGGTG CTACTGAATCAGCTTCAGAATAAGAAGTCGAACAACGGCGGCGGCGGGGGGTTGGACCTGCAGTTGATAATGGATGAGTGCAAGACTTTCTTCTTTGCCG GACATGAAACGACGGCGCTTTTGCTGACCTGGACGACTATGCTTCTGGCCTCCAATCCTACGTGGCAGGAAAAAGTCCGCGCCGAGGTCAACCAAGTCTG CAACTCACAGCCGGTTTCCCTCGAACACCTCCCTAAACTCACCTTGCTGAACATGGTGATAAACGAATCACTAAGGCTATACCCGCCGGCGAGCGTGCTT CCGAGGATGGCATTCGAGGACATAAAGCTAGGCGACATCCACATTCCGAAGGGACTCTCGATTTGGATCCCCGTGCTTGCGATTCACCACAGCCAGGAAC TCTGGGGCAAAGATGCTAACGAGTTCAACCCTGAGAGGTTCGCATCGAAGGCGACCTACTCTCCTGGCCGCCACTTCTTCCCTTTCGCGGCAGGCCCTCG CAACTGCATCGGCCAGTCTTTCGCCATGATGGAGGCCAAGATCATACTCGCCATGCTCATTTCCAAGTTTAACTTCACCCTTTCGCCGACGTACCGCCAT GCACCCGTCATTGTTCTTACCATCAAGCCCAAGTATGGTGTTCAAGTCTGCTTGACGCCACTCAAGTGA
AA sequence Show only first row Show all	>Lus10017595 pacid=23155553 polypeptide=Lus10017595 locus=Lus10017595.g ID=Lus10017595.BGIv1.0 annot-version=v1.0 MAVLTPTITVLLGLGLILAAKIVYDTFTCYYLTPKRIKLFMERQGIRGPKPRPLIGNIPDMSSLISQSTAKDCHHLHHDIVPRLLPHFVLWSKQYGKRFI YWNGIEPRMCLTEPELIKELMTKYSTKAGKSWMQQQGSKHFIGQGLLMANGENWHHQRHVIAPAFMGEKLKSYAVHMVECTQKMMQSMEAEMKGSKNFEV EIGEYMTKLTADIIARTEFDSNYEKGQKIFHLLTVLQQLCAQASRHLCFPGSRFLPSKYNREIKTLKTEVERLLMEIIQIRKDGAEIGRSCSYGNDLLGV LLNQLQNKKSNNGGGGGLDLQLIMDECKTFFFAGHETTALLLTWTTMLLASNPTWQEKVRAEVNQVCNSQPVSLEHLPKLTLLNMVINESLRLYPPASVL PRMAFEDIKLGDIHIPKGLSIWIPVLAIHHSQELWGKDANEFNPERFASKATYSPGRHFFPFAAGPRNCIGQSFAMMEAKIILAMLISKFNFTLSPTYRH APVIVLTIKPKYGVQVCLTPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10017595 [exp]	0	1
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	2.0	0.9636
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	4.5	0.9540
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	6.0	0.9522
AT3G10080			RmlC-like cupins superfamily p...		Lus10014192 [exp]	8.1	0.9122
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036115 [exp]	8.9	0.9460
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	10.4	0.9423
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	11.4	0.9329
AT1G14890			Plant invertase/pectin methyle...		Lus10037919 [exp]	13.7	0.9146
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	15.5	0.9330
AT4G09990			Protein of unknown function (D...		Lus10005822 [exp]	17.0	0.9438

Compare expression of checked genes

Lus10017595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.