Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 140 / 1e-36 RNA-binding KH domain-containing protein (.1.2) AT1G14170 111 / 7e-27 RNA-binding KH domain-containing protein (.1.2.3) AT2G03110 85 / 1e-19 RNA binding;nucleic acid binding (.1) AT5G53060 89 / 5e-19 RNA-binding KH domain-containing protein (.1.2) AT5G64390 89 / 1e-18 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G51580 87 / 3e-18 RNA-binding KH domain-containing protein (.1) AT5G46190 84 / 3e-17 RNA-binding KH domain-containing protein (.1) AT4G18375 80 / 4e-16 RNA-binding KH domain-containing protein (.1.2) AT2G22600 79 / 8e-16 RNA-binding KH domain-containing protein (.1) AT5G09560 62 / 2e-10 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033557 [exp] 327 / 1e-109 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 135 / 1e-34 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 128 / 1e-32 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 129 / 2e-32 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10033556 [exp] 116 / 9e-32 AT5G15270 88 / 1e-21 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 122 / 2e-30 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 97 / 2e-21 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10023300 [exp] 95 / 9e-21 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 94 / 1e-20 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114400 [exp] 210 / 2e-61 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 139 / 3e-36 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 136 / 2e-35 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 126 / 1e-31 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 120 / 9e-30 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 107 / 6e-25 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 89 / 8e-19 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 88 / 1e-18 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 86 / 5e-18 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 84 / 3e-17 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10017596 pacid=23155485 polypeptide=Lus10017596 locus=Lus10017596.g ID=Lus10017596.BGIv1.0 annot-version=v1.0 ATGAAATGGACCAACTCCAGTGGTCAATCTCCTTTGAGTTCACTACCTTCTGATACTACAATGTATCGCATACTATGTCCTTCAAAGAAAATCGGAAGTG TTATTGGAAAGGGTGGCAGAATCATTAAAGCTCTAAGAGAAGAAACACATTCAAAGATTAATGTTGATGGTTCTGTTCCGAATTCATACGAGAGAGTGAT TAACATCTATAGTTCTCCTGCAAAGGTTTCTACAGCTGATACTAATAATGAGAAGTCTTCTGCAGAGAATGAGCTGCGGGTCATGGAATTCCATTGTGCT ACCCAGGATGCTCTCTTGAAAGTTCATAAGCGTATTGTAGAGGATGATCGTTCCAGTGGCATGCCATCTGATGAGGAGAATGAAAGTGGTGTTATCACAG TGGGGCTTCTTGTTCCAAATAATATGGTAGGATGCATATTAGGGAAAGGTGGTGATGTTATCAAGAGATTGCGTAGTGAGACTGATGCCAAAATTCGCAT TTTTCCTCCAGAACAACTTCCTGCCTGTGCATTGAGTACTGATGAATTGGTCCAGATATCTGGGAAAATGGATGTGGTTACAAGGGGTTTGTTTGAAGTT TCCACTTTACTGCATCAAAATCCACGAAAAGAGGATGCTCCATCCGAATTGGATGAGCGTGCCATTCGTGTCTGTGCTTTTGAGGGGGCAATTACGACTA GACTGCCTGTGCCATCAAACAAAGTTGGTTGTATACTTGGACAAGGCGGGCAAGTTATCAATGAAATGAGGAAGAGGACCCTGGCTGACATTCGGATTTT CTCCAAGGATGATAAACCCAAGTGTGCATCGGATGACGAAGAGCTTATACAGATTTCTGGAAATGCTAGTGTTTCCAAAGATGCTTTAGCAGAGATAGCA TCGAGACTTACGGTTAGAACTTTAAGAGACAAAAATGCTGGAGCAGAACCTAGGCCTATTGGACCTAGTCTGGGGTATGATCCTGGAAGAAACCTACCAG GCGGAAGAACATATTCATCTGCTCCCACAAGAGCTACCAGTTCTAGTGGATATGAACCAGTCTTTAGGGTAATTGTTTTTGATGCTGTCCTTTCTGTGCT TTTATCTTTTTTGTTATTCTGGACACTGCCCTTGTTCTGGACTTCTCTTCTCCAAAAACGTGATTGA
AA sequence Show only first row Show all	>Lus10017596 pacid=23155485 polypeptide=Lus10017596 locus=Lus10017596.g ID=Lus10017596.BGIv1.0 annot-version=v1.0 MKWTNSSGQSPLSSLPSDTTMYRILCPSKKIGSVIGKGGRIIKALREETHSKINVDGSVPNSYERVINIYSSPAKVSTADTNNEKSSAENELRVMEFHCA TQDALLKVHKRIVEDDRSSGMPSDEENESGVITVGLLVPNNMVGCILGKGGDVIKRLRSETDAKIRIFPPEQLPACALSTDELVQISGKMDVVTRGLFEV STLLHQNPRKEDAPSELDERAIRVCAFEGAITTRLPVPSNKVGCILGQGGQVINEMRKRTLADIRIFSKDDKPKCASDDEELIQISGNASVSKDALAEIA SRLTVRTLRDKNAGAEPRPIGPSLGYDPGRNLPGGRTYSSAPTRATSSSGYEPVFRVIVFDAVLSVLLSFLLFWTLPLFWTSLLQKRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10017596 [exp]	0	1
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10022078 [exp]	4.6	0.8209
AT1G27180			disease resistance protein (TI...		Lus10040576 [exp]	6.2	0.7911
AT5G43820			Pentatricopeptide repeat (PPR)...		Lus10010662 [exp]	8.5	0.7645
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	9.4	0.7910
AT5G03260		LAC11	laccase 11 (.1)		Lus10013800 [exp]	12.8	0.7675
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	15.5	0.8048
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	15.5	0.7904
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Lus10003299 [exp]	17.9	0.7587
AT1G06510			unknown protein		Lus10001505 [exp]	19.6	0.7909
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	20.0	0.7684

Compare expression of checked genes

Lus10017596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.