Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57510 63 / 2e-13 unknown protein AT5G13880 39 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033559 [exp] 194 / 1e-64 AT5G57510 84 / 1e-21 unknown protein Lus10009171 [exp] 121 / 7e-36 AT5G57510 88 / 6e-23 unknown protein Lus10028472 [exp] 118 / 1e-34 AT5G57510 87 / 1e-22 unknown protein Lus10026228 [exp] 48 / 1e-07 AT5G57510 62 / 6e-13 unknown protein Lus10042441 [exp] 48 / 2e-07 AT5G57510 64 / 9e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G094100 [exp] 81 / 4e-20 AT5G57510 107 / 5e-31 unknown protein Potri.006G273566 [exp] 53 / 2e-09 AT5G57510 75 / 4e-18 unknown protein Potri.006G273500 [exp] 53 / 2e-09 AT5G57510 75 / 4e-18 unknown protein Potri.018G006800 [exp] 42 / 1e-05 AT5G57510 61 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017598 pacid=23155565 polypeptide=Lus10017598 locus=Lus10017598.g ID=Lus10017598.BGIv1.0 annot-version=v1.0 ATGCCAAGCATCAAAGCAGAGCATCGGCGGCGGTGGGCTCCTCTGGACCGACTGAAAAACGCAGTGAAGAAAATCAAAGTCCTCCTCAACTTCGATCTTC ACGTTCGGCGATTAGCTTCGGCGGGGTCGCTCCTCGCCGCCGGATCTTCCTCCTCCACTTTTTTCAGGGGGATTAGCTTCGGCGGCGCCGAGGACCGGCC AGGATTGACGACGGCGACGAGTACTGATTCTTCTGATTCCGAATGTTGTTGGTATTCTCCTAGGGGTGATTTTGCGTCCCCTACGACGTCGTTGAAGTCG GGGATTCGGAGAACGATCAGCCGCGGGTTTTCGATGGAGGATGACGTGGACAAGAGGGCGGAGATGTTCATAGTGAATTTCCGGCGGCAGCTTCAGATTG AGCGTCAGATTTCCTTGGAGCTTATGTACTGTCTGGAGAAAACGTGA
AA sequence Show only first row Show all	>Lus10017598 pacid=23155565 polypeptide=Lus10017598 locus=Lus10017598.g ID=Lus10017598.BGIv1.0 annot-version=v1.0 MPSIKAEHRRRWAPLDRLKNAVKKIKVLLNFDLHVRRLASAGSLLAAGSSSSTFFRGISFGGAEDRPGLTTATSTDSSDSECCWYSPRGDFASPTTSLKS GIRRTISRGFSMEDDVDKRAEMFIVNFRRQLQIERQISLELMYCLEKT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57510			unknown protein		Lus10017598 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031810 [exp]	12.6	0.9316
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	14.5	0.9398
AT5G02260		ATHEXPALPHA1.10...	expansin A9 (.1)		Lus10023902 [exp]	18.8	0.9219
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006552 [exp]	20.0	0.9367
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10014148 [exp]	29.0	0.9360
AT4G37290			unknown protein		Lus10011512 [exp]	29.7	0.9349
AT2G32390		GLR6, ATGLR3.5	glutamate receptor 3.5 (.1.2....		Lus10025426 [exp]	32.3	0.8814
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	32.5	0.9330
					Lus10006567 [exp]	33.3	0.9349
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	34.6	0.8907

Compare expression of checked genes

Lus10017598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.