Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16110 129 / 2e-37 unknown protein AT3G02555 114 / 7e-33 unknown protein AT1G68490 104 / 1e-28 unknown protein AT1G13390 101 / 2e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033560 [exp] 285 / 9e-100 AT5G16110 136 / 3e-40 unknown protein Lus10028474 [exp] 209 / 7e-70 AT5G16110 160 / 8e-50 unknown protein Lus10009170 [exp] 205 / 2e-68 AT5G16110 160 / 7e-50 unknown protein Lus10027224 [exp] 89 / 6e-23 AT3G02555 84 / 2e-20 unknown protein Lus10041444 [exp] 83 / 3e-20 AT1G68490 180 / 5e-58 unknown protein Lus10038934 [exp] 72 / 2e-16 AT1G68490 71 / 4e-16 unknown protein Lus10034327 [exp] 69 / 6e-15 AT1G68490 149 / 1e-46 unknown protein Lus10027557 [exp] 38 / 0.0004 AT1G68490 64 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099800 [exp] 173 / 9e-56 AT5G16110 135 / 7e-40 unknown protein Potri.017G114700 [exp] 170 / 2e-54 AT5G16110 139 / 4e-41 unknown protein Potri.015G047100 [exp] 140 / 1e-42 AT1G68490 116 / 4e-33 unknown protein Potri.010G124400 [exp] 127 / 2e-37 AT1G68490 151 / 7e-47 unknown protein Potri.008G121000 [exp] 120 / 6e-35 AT1G68490 150 / 3e-46 unknown protein Potri.012G056500 [exp] 117 / 5e-34 AT1G68490 119 / 2e-34 unknown protein Potri.005G108633 [exp] 46 / 1e-06 AT5G16110 50 / 6e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017599 pacid=23155540 polypeptide=Lus10017599 locus=Lus10017599.g ID=Lus10017599.BGIv1.0 annot-version=v1.0 ATGGTTGCCTCTTGTGACGAAGCAAGATCATCTATGGTTTCCATCTCTGATCTCAGGGGTCCTGTTGTCTGCCCCAAGCCTCGCCGAGTTGGAATCCTAG CTAACAATTCCGTCCGCCCTTTAAGGTGGCAATTGAGCTCACATTTTGACAGTCATCAAGCGGATGGGATTGATAACGCAGGGGCTGAGCTACTGGACCT TATCCTTAGGAAGGAGGATTATGATTCTGAGAAGTCTGCAACTCAGATGGCATCATCACCTCCTTATTTCTGCGGGTCTCCTCCAGCCAGAGCTGCGAAC CCTCTGATTCATGATGCTCTATTCAGGGATGAAAATGGGTTTCCCATGATGTCACCATCGTCATTGTTTTCTCCATCTCCATCGGCGCGAAAGGGAGGCA GTAGTGCTGCGAGGATGAAGTATGGACTTAAGCCAGCTGCAGTTAGAGTAGAAGGGTTTGATTGCCTCAACAGGGATAGCCAGCATTCCAGGATCTCCGC AATGGCTTAA
AA sequence Show only first row Show all	>Lus10017599 pacid=23155540 polypeptide=Lus10017599 locus=Lus10017599.g ID=Lus10017599.BGIv1.0 annot-version=v1.0 MVASCDEARSSMVSISDLRGPVVCPKPRRVGILANNSVRPLRWQLSSHFDSHQADGIDNAGAELLDLILRKEDYDSEKSATQMASSPPYFCGSPPARAAN PLIHDALFRDENGFPMMSPSSLFSPSPSARKGGSSAARMKYGLKPAAVRVEGFDCLNRDSQHSRISAMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16110			unknown protein		Lus10017599 [exp]	0	1
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	12.3	0.9267
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	12.3	0.9291
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	16.5	0.9121
AT4G26060			Ribosomal protein L18ae family...		Lus10027625 [exp]	17.2	0.9240
AT5G44250			Protein of unknown function DU...		Lus10021741 [exp]	17.7	0.9236
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	22.1	0.9212
AT5G16110			unknown protein		Lus10033560 [exp]	25.2	0.8729
AT1G51550			Kelch repeat-containing F-box ...		Lus10033377 [exp]	27.2	0.9041
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10016798 [exp]	27.8	0.9059
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	27.9	0.9106

Compare expression of checked genes

Lus10017599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.