Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16120 408 / 2e-143 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 335 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 270 / 1e-89 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 265 / 3e-87 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 261 / 1e-85 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 257 / 8e-85 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 253 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G55180 236 / 1e-76 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 226 / 3e-72 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 220 / 4e-70 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033561 [exp] 614 / 0 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017601 [exp] 412 / 2e-145 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 401 / 6e-141 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10034331 [exp] 357 / 7e-123 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10041441 [exp] 356 / 1e-122 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10028475 [exp] 283 / 4e-96 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10007877 [exp] 275 / 8e-91 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 262 / 1e-86 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 254 / 1e-83 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 440 / 9e-156 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G124000 [exp] 347 / 8e-119 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 262 / 3e-86 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 258 / 6e-85 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 258 / 7e-85 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 248 / 4e-81 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 246 / 2e-80 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 166 / 6e-49 AT1G52760 560 / 0.0 lysophospholipase 2 (.1) Potri.001G175000 [exp] 165 / 1e-48 AT1G52760 554 / 0.0 lysophospholipase 2 (.1) Potri.008G040000 [exp] 162 / 1e-47 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10017600 pacid=23155480 polypeptide=Lus10017600 locus=Lus10017600.g ID=Lus10017600.BGIv1.0 annot-version=v1.0 ATGAAGATCCCTTATGACGGGATGAAGATAGATGAGTGGTATGAAGTTAACAGCAGGGGACTAGAGATATTCTCGAAATCATGGCTTCCTGCTACGAATC CTCCGAAAGCATTGATCTGCTACTGCCATGGATATGGCGAGACTTGCACTTTCGTGTTCGAAGGGGTTGCGAGGAAGCTGGCGTTGTCTGGGTATGCAGT GTTTGCTATGGACTACCCTGGGTTTGGACTTTCTCAAGGTCTCCATGGCTACATCCCCAGCCTTGACTTGCTATCCTCTGATGTTGCTGAACATTTCTCA AAACTCCGAGGGAAACCGGAGTATCGAGGCCTGCGAAGCTACCTGTTCGGACAGTCGCTGGGAGGAGCAGTAGCACTCAAGGTGCACTTGAAGCAACCAA ATGAATGGGACGGTGCCATTCTTGTTGCCCCAATGTGCAAATTTGCAGGGAACATGCTTCCCAATTGGCTAGTACTCAAAATCCTGATAGGGGTTGCCCA TCTTTTCCCCAAGCTCAAAATAGTCCCTCACCAAAACTTCGTCAAGATGGCTTTTCGAGACCCCAAAAAGCGAGATCTGGCAGCGTACAATGTGATAGCT TACAAGGACACAGCCAGACTCTGGACCGCGCTCGAATGTCTGAGAACGACCCAGGAGCTCGAGCGTTGCTTACACAAGGTTGGGTTGCCGCTGCTGATAC TGCACGGAGAGGCGGACGTGGTGACGGATCCATCGGTGAGCAAGGCGTTGTACGAGAAGGCAAGCAGTTGGGACAAGAAGTTCAAACTGTACAAGGATGC ATACCATTCGCTTCTGGAAGGGGAGACCGATGAGGTGATTTTCAGAGTGATGGACGACATTATCTCTTGGCTTGATCATCACCATACTGATCCCGCCATC TCCCAATCATAA
AA sequence Show only first row Show all	>Lus10017600 pacid=23155480 polypeptide=Lus10017600 locus=Lus10017600.g ID=Lus10017600.BGIv1.0 annot-version=v1.0 MKIPYDGMKIDEWYEVNSRGLEIFSKSWLPATNPPKALICYCHGYGETCTFVFEGVARKLALSGYAVFAMDYPGFGLSQGLHGYIPSLDLLSSDVAEHFS KLRGKPEYRGLRSYLFGQSLGGAVALKVHLKQPNEWDGAILVAPMCKFAGNMLPNWLVLKILIGVAHLFPKLKIVPHQNFVKMAFRDPKKRDLAAYNVIA YKDTARLWTALECLRTTQELERCLHKVGLPLLILHGEADVVTDPSVSKALYEKASSWDKKFKLYKDAYHSLLEGETDEVIFRVMDDIISWLDHHHTDPAI SQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017600 [exp]	0	1
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10033561 [exp]	1.0	0.9913
AT1G15260			unknown protein		Lus10011448 [exp]	2.8	0.9596
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	3.0	0.9528
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10017856 [exp]	6.0	0.9359
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	6.9	0.9485
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	7.1	0.9371
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	7.5	0.9338
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	11.6	0.9322
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	15.2	0.8844
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10019407 [exp]	15.6	0.9273

Compare expression of checked genes

Lus10017600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.