Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16120 498 / 2e-178 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 362 / 2e-124 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 281 / 4e-93 alpha/beta-Hydrolases superfamily protein (.1) AT2G47630 277 / 2e-91 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 263 / 3e-86 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39420 259 / 8e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 256 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 246 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 245 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 226 / 1e-71 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009169 [exp] 542 / 0 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 432 / 6e-152 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 412 / 3e-145 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 389 / 9e-135 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 388 / 2e-134 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10028475 [exp] 360 / 1e-125 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10007877 [exp] 286 / 1e-94 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 265 / 2e-87 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10011212 [exp] 254 / 5e-83 AT1G11090 430 / 2e-152 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G114800 [exp] 537 / 0 AT5G16120 520 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G124000 [exp] 391 / 1e-135 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 276 / 2e-91 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 272 / 2e-89 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 260 / 3e-85 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 253 / 2e-82 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 248 / 1e-80 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 208 / 1e-64 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 200 / 1e-61 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G466700 [exp] 183 / 4e-55 AT5G14980 346 / 6e-119 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF12146 [flax] [poplar] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Lus10017601 pacid=23155563 polypeptide=Lus10017601 locus=Lus10017601.g ID=Lus10017601.BGIv1.0 annot-version=v1.0 ATGCCAGTAAAGCCTCCGGTGCGGTTCCCCGAGCTCGACGCCGAGGTCCGGCGAATCGTCAACGCGAACATGGAGGAAGTCCACGCAAGACGACGAGCTC GAGATGCTATTAAGGACATCCAGCTCAATATTGACCACATATTGTTCAAGACACCAAGTGATGGGATCAAAGTCGTCGAGTCATACGAGGTGAACTCCAG AGGGATTGAGATTTTCACCAAGAGGTGGCTGTCGGAGGCCCCGAAAGCTGTGGTGTGCTATTGTCATGGCTATGGAGACACTTGCACCTTCTTCTTTGAA GGAGTCGCCAGGAAGATGGCTTTATCTGGGTACAGTGTTCTGGCAATGGATTACCCTGGATTTGGCCTTTCAGAAGGTCTTCATGGCTACATTTCAAGTT TCGACGCCCTTGTGGATGATGTCATTGACCACTACAATAAGGTCAAAGGGGAACCTGAATTTCGAAACCTTCCGAGCTTCCTGTTCGGGCAGTCAATGGG CGGGGCAGTGGCGCTGAAGGTTCACTTGAAACAGCGAAATGCATGGACCGGTGCCATTCTTGTCGCACCAATGTGCAAAATTGCAGACGACATGGCTCCA CCGTGGGTCTTGAAGCAACTCCTGATCGGCATAGCCAGTTTCCTTCCCAAGTACAAGCTAGTACCGCAGAAAGACATCGCCGAGGCTGCATTTAGGGACT TGAAGAAGCGAGAAATGGCGGCATACAACGTCATTGCTTACAGCCAGAAGCCACGGTTAAGGACTGCCTTAGAGATGCTGAGAACAACTCAAGAGATTGA ACAACGGCTGGAAGAAGTATCAGTGCCAATGTTGATACTGCACGGGGATGCGGACATCGTGACGGACCCATTGGTGAGCAAGTTATTGTACGACAAGGCA AAGAGTTCGGACAAGACGCTGAAGATATACAAAGATGCTTACCATTCGTTGCTCGAGGGAGAGCCTGATGATGTTGTTCTTCAAGTGTTTGAAGACACAG TCAGTTGGCTAGACCAGCACAGCAAATGA
AA sequence Show only first row Show all	>Lus10017601 pacid=23155563 polypeptide=Lus10017601 locus=Lus10017601.g ID=Lus10017601.BGIv1.0 annot-version=v1.0 MPVKPPVRFPELDAEVRRIVNANMEEVHARRRARDAIKDIQLNIDHILFKTPSDGIKVVESYEVNSRGIEIFTKRWLSEAPKAVVCYCHGYGDTCTFFFE GVARKMALSGYSVLAMDYPGFGLSEGLHGYISSFDALVDDVIDHYNKVKGEPEFRNLPSFLFGQSMGGAVALKVHLKQRNAWTGAILVAPMCKIADDMAP PWVLKQLLIGIASFLPKYKLVPQKDIAEAAFRDLKKREMAAYNVIAYSQKPRLRTALEMLRTTQEIEQRLEEVSVPMLILHGDADIVTDPLVSKLLYDKA KSSDKTLKIYKDAYHSLLEGEPDDVVLQVFEDTVSWLDQHSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10017601 [exp]	0	1
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	2.2	0.9080
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	2.4	0.9265
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	3.5	0.9084
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	4.6	0.9134
AT3G45310			Cysteine proteinases superfami...		Lus10033428 [exp]	5.3	0.9158
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	9.4	0.8946
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	11.2	0.8889
AT1G25520			Uncharacterized protein family...		Lus10034293 [exp]	11.8	0.8892
AT3G07530			unknown protein		Lus10040483 [exp]	14.9	0.8796
AT5G66450			Phosphatidic acid phosphatase ...		Lus10028328 [exp]	15.0	0.8872

Compare expression of checked genes

Lus10017601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.