Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02570 463 / 3e-162 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1) AT1G67070 449 / 1e-156 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033563 [exp] 732 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10009165 [exp] 634 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10028480 [exp] 632 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10015062 [exp] 479 / 5e-169 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115500 [exp] 543 / 0 AT3G02570 560 / 0.0 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1) Potri.004G099100 [exp] 539 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF01238 [flax] [poplar] PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence Show only first row Show all	>Lus10017603 pacid=23155580 polypeptide=Lus10017603 locus=Lus10017603.g ID=Lus10017603.BGIv1.0 annot-version=v1.0 ATGGAATCTTCTGACCTGGTCAACAACCGTCGTCGCCGCCTCCACCGCCTGCGATGCTCGGTTCAACACTACGATTGGGGGGTAATGGGCAAGGATACTT CTTTGGTGGCGAGGCTGTGTGCTTTGAATTCCGACTTTGAGACCCAACTCAACAAGCCTTACGCTGAGTTCTGGATGGGCATCCATGGCTCCGCTCCCTC TTTCGTCATCGAAGACGGTAATGGAACTATCGGCAGCAATGGCGCTGCCGCGTTGAGTTTGAAAGACTGGATTTTTCAGAATCCTGGTGTGCTAGGCGAC AAGGTCATGAATAAATGGGGTTCTGATCTTCCCTTCTTGTTCAAGATACTATCAGTGGGCAAAGCATTATCGATTCAGGCGCATCCGGATAAAGAATTGG CAAAGAAGCTTCATAAGTTGCACCCAGATGTTTACAAGGATGTGAATCACAAGCCTGAGATGGCCTTGGCCATAACAGAGTTTGAAGCCCTTTGTGGCTT TGTCTCTTTGGAGGAGCTGAAAGATGTCCTCTGCAATATTCCAGAGATTCTAGACTTGATTGACAGTAAAGATACAAATCAACTTCTGCAAATCAATAAT AAAGTTGAAGGTGAAAAGGTTAAATCACTACTTAGATCCATTTTTACCCAACTAATGTCAACTAGCAAGGAGATGACTACCAAAGCGGTACGCAAGTTGA AAATCAGATTGCAGAAGCAGAGCCAGGTAGAACAGCTGACTGATAAAGAAAATCTTGTGTTGAAATTGGAGAAACAATATCCAGATGACATTGGTGTAAT ATCAGCCTTCTTTTTAAACCATGTGAAGCTTAAACCTGGTCAAGCTTTGTATCTTGGAGCAAATGAACCACACGCTTATATCTCCGGCGACTGCATCGAA GGCTTCCCTGAAATTCTGAAAGGGTTTCCTCTGAGTCCATATATAACAAGGTACCTTCCCCCATTCGACGAATTCGAGGTGGATCATTGCTTCCTTCCGA AAGGGGCATCTACTGTGTTTCCTGCAGTGGAAGGGCCGTCTATATTTGTAATCACGGGTGGCGAGGGAGCAATGCAGGAAGGCTCATCATCTTTGAGGGA TGTAGTTATGGAAGGAAATGTCATATTTGCACCTGCAGGTATCCAGATCGAGGTAAATACTGGGTCCGAGTTGCATCTGTATAGAGCTGGAGTAAATAGT CGATTCCTCCAAACCCTTTGA
AA sequence Show only first row Show all	>Lus10017603 pacid=23155580 polypeptide=Lus10017603 locus=Lus10017603.g ID=Lus10017603.BGIv1.0 annot-version=v1.0 MESSDLVNNRRRRLHRLRCSVQHYDWGVMGKDTSLVARLCALNSDFETQLNKPYAEFWMGIHGSAPSFVIEDGNGTIGSNGAAALSLKDWIFQNPGVLGD KVMNKWGSDLPFLFKILSVGKALSIQAHPDKELAKKLHKLHPDVYKDVNHKPEMALAITEFEALCGFVSLEELKDVLCNIPEILDLIDSKDTNQLLQINN KVEGEKVKSLLRSIFTQLMSTSKEMTTKAVRKLKIRLQKQSQVEQLTDKENLVLKLEKQYPDDIGVISAFFLNHVKLKPGQALYLGANEPHAYISGDCIE GFPEILKGFPLSPYITRYLPPFDEFEVDHCFLPKGASTVFPAVEGPSIFVITGGEGAMQEGSSSLRDVVMEGNVIFAPAGIQIEVNTGSELHLYRAGVNS RFLQTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10027367 [exp]	1.0	0.8199
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	4.5	0.7689
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	6.6	0.7235
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	7.5	0.7758
					Lus10009962 [exp]	8.5	0.7657
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	10.2	0.7661
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	10.6	0.7549
AT3G06240			F-box family protein (.1)		Lus10026587 [exp]	11.6	0.7342
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	13.7	0.7307
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	15.9	0.6961

Compare expression of checked genes

Lus10017603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.