Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 77 / 1e-16 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 59 / 3e-10 F-box family protein (.1) AT4G22390 55 / 4e-09 F-box associated ubiquitination effector family protein (.1) AT3G23880 49 / 7e-07 F-box and associated interaction domains-containing protein (.1) AT3G07870 42 / 0.0001 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032458 [exp] 149 / 6e-44 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017605 [exp] 122 / 6e-34 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 86 / 9e-20 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10027322 [exp] 78 / 5e-18 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 65 / 2e-12 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 65 / 2e-12 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 65 / 2e-12 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040338 [exp] 64 / 6e-12 AT4G12560 78 / 1e-15 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040463 [exp] 59 / 3e-10 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010800 [exp] 121 / 6e-33 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 100 / 4e-25 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 80 / 9e-18 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 71 / 2e-14 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 69 / 1e-13 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 69 / 1e-13 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G199800 [exp] 64 / 6e-12 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 61 / 3e-11 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 61 / 5e-11 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.016G012700 [exp] 56 / 2e-09 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017604 pacid=23155498 polypeptide=Lus10017604 locus=Lus10017604.g ID=Lus10017604.BGIv1.0 annot-version=v1.0 ATGGGCGGGGCATTACATTGGACAGGAATGGATTCCTCGCGATCTAAGTTTGTTGTTCTTGCTTATGATCTTGCGCTGAATCAATGCCGAGAAATTCCAC AACCAAAGGAGTATGGCAGTGAGAAGAGTTGTGGATACTTCTTGAGCCTTGGGGAACTGAGGAATTGCTTGTGCATTTTCGCTAATTACTTAGGGAACAG TGTTCATGTGTGGATGACGGAGGAGTACGACGTGGAGAGTTCTTGGAGCAAGCTATTCAGTGTTCCGAATTCAACATTGTCGTACGATTTCTCACTAGTG CCTCTAGGATTGTCCGCGAATGGTGATGAAGTTCTGCTCCATTTGGATAGGGAAAGGCTTGTTTGGATTGACATGGAGAAGAAGAGACAGGGTAGTGCTC AAGAGATCACCATCCTTGGTTGGGAAGGTGGAAGGTTTGATGCTGCGATTTGCTTCGCAAGCTTGGTTCCCCCTGATGGGAAATCACCTCCTAAAGAAGT GATCGTTAGAAAGAACAAGCAAAAAGAAGTAGTAGTGGTTGAAGAGGAGGAGTAA
AA sequence Show only first row Show all	>Lus10017604 pacid=23155498 polypeptide=Lus10017604 locus=Lus10017604.g ID=Lus10017604.BGIv1.0 annot-version=v1.0 MGGALHWTGMDSSRSKFVVLAYDLALNQCREIPQPKEYGSEKSCGYFLSLGELRNCLCIFANYLGNSVHVWMTEEYDVESSWSKLFSVPNSTLSYDFSLV PLGLSANGDEVLLHLDRERLVWIDMEKKRQGSAQEITILGWEGGRFDAAICFASLVPPDGKSPPKEVIVRKNKQKEVVVVEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	0	1
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Lus10030761 [exp]	5.5	0.7933
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10017970 [exp]	8.1	0.7573
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	8.7	0.8125
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	9.1	0.8306
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	9.2	0.8149
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10016939 [exp]	10.6	0.7636
AT5G49320			Protein of unknown function (D...		Lus10016851 [exp]	13.4	0.8012
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	13.9	0.7762
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	13.9	0.8136
AT5G06370			NC domain-containing protein-r...		Lus10004198 [exp]	14.7	0.8292

Compare expression of checked genes

Lus10017604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.