Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 109 / 5e-27 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 77 / 7e-16 F-box family protein (.1) AT4G22390 71 / 2e-13 F-box associated ubiquitination effector family protein (.1) AT3G07870 66 / 8e-12 F-box and associated interaction domains-containing protein (.1) AT3G23880 61 / 3e-10 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032458 [exp] 320 / 1e-108 AT4G12560 120 / 1e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017604 [exp] 117 / 4e-32 AT4G12560 77 / 7e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 105 / 9e-26 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031512 [exp] 89 / 6e-20 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10027322 [exp] 77 / 7e-17 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10040463 [exp] 77 / 1e-15 AT4G12560 117 / 7e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031480 [exp] 76 / 3e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10031478 [exp] 76 / 3e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10000190 [exp] 76 / 3e-15 AT4G12560 127 / 2e-32 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010800 [exp] 151 / 6e-43 AT4G12560 159 / 2e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 132 / 2e-35 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 108 / 1e-26 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 106 / 6e-26 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 99 / 2e-23 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 99 / 2e-23 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 82 / 2e-17 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 82 / 2e-17 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G037312 [exp] 79 / 1e-16 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 79 / 3e-16 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017605 pacid=23155577 polypeptide=Lus10017605 locus=Lus10017605.g ID=Lus10017605.BGIv1.0 annot-version=v1.0 ATGCCGTTTACACTCTGCTTGAATTCGCATAGGGTGGGAACTTTCGTGAACCGCGAGGACGGGCGTAGGGTAATTTACGACCAAGGGTACGGATTCGGGT ACGCTTCCGACTCCGACGACTATAAGGTAGTCCAGATTGTCCAGTTGTTCAAGCCTGACTTAAAATCTCTCAATTCTCATTTGGTTAGTTATGGGGTTAG GTCGAATTCTTCTGTAGACGTAGAATTCCCTTATCTCCTACTTCGTTCGCGGCAAACAGGTGTGTTTGTGAGTGGGGCAATTCATTGGACAGTTGGTCAG TACGAGGATGATGATGATCCGCGCACTGACGAACCGGGAATCGTGATTATTGGCTTTGATTTAGAACTCAACAAACTCAGGGAGGTGCCACAGCCAGAGT ACCATAACTGGGATGACTTCGAATCGAAACTTGGCGAGCTGGAGAAGTGTTTGTGTCAATTTACTTATTACAAGGACAGGTACATGGATGTTTGGATGAT GAAAGAGTATGGTGTTAAGGAGTCGTGGAGCATATTGTTCAAGGTCCGACATCCCGAGTTGTGCTACAAGGATTGGATGGTGCCTCTAGGATTCTCGGTG ACTGGTCAAGAGGTTCTTATGGAGTTGGATGGAAAGAGGCTTGTTTGGTATGACCTCAAGGATCCCAACAAGGTTAAAGCTGTTGAGGAGGTCACCATTG ATGGGTTGGACGGGAAGATGGATTCAGTTGTATTATGCCATGGAAGCCTGGTTTCGCCCTTTGGTGCCAAGCTTCCACCACCCAAGGAGGAAGTGAAGAA AGTTGACAAGCAACAACAGAAACCACAGCCGCAAAGGAAGAAGAGGGATGGTGATTTCTTGGCTAGTGGGTTCAAGCTGAAGCTTTAG
AA sequence Show only first row Show all	>Lus10017605 pacid=23155577 polypeptide=Lus10017605 locus=Lus10017605.g ID=Lus10017605.BGIv1.0 annot-version=v1.0 MPFTLCLNSHRVGTFVNREDGRRVIYDQGYGFGYASDSDDYKVVQIVQLFKPDLKSLNSHLVSYGVRSNSSVDVEFPYLLLRSRQTGVFVSGAIHWTVGQ YEDDDDPRTDEPGIVIIGFDLELNKLREVPQPEYHNWDDFESKLGELEKCLCQFTYYKDRYMDVWMMKEYGVKESWSILFKVRHPELCYKDWMVPLGFSV TGQEVLMELDGKRLVWYDLKDPNKVKAVEEVTIDGLDGKMDSVVLCHGSLVSPFGAKLPPPKEEVKKVDKQQQKPQPQRKKRDGDFLASGFKLKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017605 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10007075 [exp]	1.4	0.8851
AT4G03415			Protein phosphatase 2C family ...		Lus10039802 [exp]	2.0	0.8845
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	4.0	0.8491
AT1G76660			unknown protein		Lus10025171 [exp]	4.2	0.8738
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	5.5	0.8392
AT3G24630			unknown protein		Lus10011100 [exp]	6.9	0.8449
AT4G03210		XTH9, EXGT-A6, ...	xyloglucan endotransglucosylas...		Lus10018503 [exp]	8.1	0.8458
AT1G58170			Disease resistance-responsive ...		Lus10042488 [exp]	8.7	0.8358
AT2G46420			Plant protein 1589 of unknown ...		Lus10004015 [exp]	9.2	0.8689
AT1G69580	GARP		Homeodomain-like superfamily p...		Lus10037169 [exp]	9.5	0.8141

Compare expression of checked genes

Lus10017605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.