Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67040 143 / 4e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033565 [exp] 659 / 0 AT1G67040 236 / 3e-66 unknown protein Lus10037725 [exp] 60 / 7e-09 AT5G26910 276 / 4e-80 unknown protein Lus10016854 [exp] 59 / 7e-09 AT3G58650 134 / 2e-33 unknown protein Lus10020689 [exp] 52 / 3e-06 AT5G26910 350 / 2e-107 unknown protein Lus10029857 [exp] 50 / 6e-06 AT3G58650 345 / 2e-105 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098300 [exp] 216 / 4e-59 AT1G67040 339 / 2e-102 unknown protein Potri.017G116000 [exp] 215 / 1e-58 AT1G67040 317 / 3e-94 unknown protein Potri.010G140900 [exp] 71 / 3e-12 AT3G58650 235 / 4e-65 unknown protein Potri.T171201 [exp] 67 / 3e-11 AT3G58650 235 / 3e-65 unknown protein Potri.013G010500 [exp] 67 / 4e-11 AT5G26910 371 / 6e-115 unknown protein Potri.008G108600 [exp] 66 / 7e-11 AT3G58650 234 / 6e-65 unknown protein Potri.005G019700 [exp] 64 / 5e-10 AT5G26910 417 / 4e-132 unknown protein Potri.005G176051 [exp] 44 / 1e-05 AT1G67040 67 / 1e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017607 pacid=23155464 polypeptide=Lus10017607 locus=Lus10017607.g ID=Lus10017607.BGIv1.0 annot-version=v1.0 ATGGACGAGACTTCCTCCACCGTCAGCTGCCTCGCCGTTGCCGACAACAACAACCAACGCCCTCAAAAGCCTGGTGGCTGCGTCGGCATTTTCTTCCACC TCTTTGACTGGAACCGTCGTTTCGCCAAGAGGAAGAAGCTCTTCTCCTCCTCTTCCAAGAAACTCCTCCCTCCTTCCCGAACGGAGCATCCTCCTTCCAT TAAGTTTGCCGCCGACGAGAAGATGCCCAAATCCAAGCCTCATATGTTGGTTGACCCGAAGAAGGGCGGTAACAGGAGTTGCTCAGAGATTCAGAAGAAG CAAGAAATGCGGCCACCTAGTTTGGTTGCTAAGCTGATGGGGCTGGACTCAATGCCGGCGAAGAAATATTCTAATCCAGATTCTGGCATGGAAAAGGCAA GCGCAAAGGTTGAATCATCTAGGCCACAGAAGCTTCAAAAGACTGGTGGGTTTGGAGCTGAGGCTTTACAGATTAGGAATGTTCTTCAGTCGGCTAGGAA GCAACATAACCACAGTACTAGAAAACTTGCTAGCCCAGTTAAGAGTCCTAAGTTTTTATCATCAACTACAAGGCATGCATCCACAAGGACCTCTAAGTTG ATTGATGCGGCTACTAGGATTTTGGAGCCTGGTTTACAGGCTACTCAGAGAGCCAAATCCGCCATTGCGTACTCGAATTCGATGCGTTTCGACCACTCTC TTAGTAGTAGTAGTTTTGATGAGGTGTCGGATGTGGGGATGGGACAATATGTGAAGGAACAACATGATGAGAGTAGTAATCTAGTAACTTCCTGCAACAA CTGTGGGAATTTGGTTGACGTGGTAGTAGAATCAAGGCTTAATTCGCTGGCTTCTCATTTCGCTAACTCGAGCCATGGAATGACACACTCCAACCAAGGG AGGGATCCTCCAGCTGCCTGCAAGAGGAAACAAAGCAGCGAGGCAGATATGCAGGAGAAAGCAAGAGCCTTTAGTGAAGTTGTCACTGTAGTTGGTGCAG TAGATAGGCAGGCAATGCCAATGGCACGCGAGTTTCGAGCTCAGGGAGGGGTGTCTCCATTTCGACAAGGAGGCAGCCAACCAAGGGAAGAGACATCATC TCCTTCTGCTGGATTTAAGCAGAGAAGCCCCCAAGCTAACAATAAAACAATGTCCATAGGCAATGATGATGGTTCAATACCAAGGTCCAGTTTCATAAGT AACATAGAAAGTAGCAGCAGTAGGACCAAGGATTTCATTGCTATGAACCGAAGTTTGACTGGCAGGTCAGCCAGGCCTCGTGTATCTAACAACATGGAGA GGAAGTTCATCAACAGAAGAGACGATGGTTTGCCACCGTTAAGGCGGGGAAATGGCCAACATCCCATAAGATCTACTGCTAGCATTCTCCAGGAGTTGAT ATCTGCGTTGACAATAGAGCAGCTTACTTCTCCACACACTAATAATTTTCCCAATCTCACTACACCTTTCCAGAAAGGAAGGAAGTTAATACATGACAGC GATCATCTAAGTCCTGGATCGGTTCTTGACGCTAGCTTCTCAACTGAAAGCTGCCTCTCTAGCAGCCTGGATGACAACTCAGTGTGCAGGTTGCTTCCGG ACTTTGTTGATACCTCGCATGATATGGATCAAGGAAGGACCTTTCCCAAGCTGGTGACTAACATGCTAGACCATATCTCCAGAATACTACAGAGTATTAC TCTAGCTGGTGGCTGCTGCCAATGGACAAGCAGAGACCTTGGCCATGCAAAAGAAACCATCTTGACAGCTGAACTCTTATTTGGACGTCATAGTGCAAAT CGAGTGAGAAGTTCAGTATTGGAACGTTTCCTTCTCGACGAGTTCCATGCCCTCTCAATTCACATCAGATCGGATGGTGACAACTTCATTTATGGTATGA AAGGGAGTAAAAAAGAGGGCAATAACCAACTCAGGAGGCTTCTGTTCGACTGTGTAATCGAATGGTTAGACTTGAGATGCAGAAAATACTGCGATTCCAG TTACAGAACATGGAGACAGTTGCTCCCCCCTCAGGAATGGTGCACACAGTTGGTTAATGAAGAGGTTGGAGTAGAGATGAAGAGATGGACGAACATGGAG GGTATGATACCGGACGAAATCTTAGAGCTGGAGATTGGTCAGTCCATGGGGAAATGGACCGAGTTCGAGATGGAATCGTGCGAAATCAGTCGGGACATTG TTGAGGCTTTGTTGGAGGAAATTGTGAGAGAACTTTGGCTATAG
AA sequence Show only first row Show all	>Lus10017607 pacid=23155464 polypeptide=Lus10017607 locus=Lus10017607.g ID=Lus10017607.BGIv1.0 annot-version=v1.0 MDETSSTVSCLAVADNNNQRPQKPGGCVGIFFHLFDWNRRFAKRKKLFSSSSKKLLPPSRTEHPPSIKFAADEKMPKSKPHMLVDPKKGGNRSCSEIQKK QEMRPPSLVAKLMGLDSMPAKKYSNPDSGMEKASAKVESSRPQKLQKTGGFGAEALQIRNVLQSARKQHNHSTRKLASPVKSPKFLSSTTRHASTRTSKL IDAATRILEPGLQATQRAKSAIAYSNSMRFDHSLSSSSFDEVSDVGMGQYVKEQHDESSNLVTSCNNCGNLVDVVVESRLNSLASHFANSSHGMTHSNQG RDPPAACKRKQSSEADMQEKARAFSEVVTVVGAVDRQAMPMAREFRAQGGVSPFRQGGSQPREETSSPSAGFKQRSPQANNKTMSIGNDDGSIPRSSFIS NIESSSSRTKDFIAMNRSLTGRSARPRVSNNMERKFINRRDDGLPPLRRGNGQHPIRSTASILQELISALTIEQLTSPHTNNFPNLTTPFQKGRKLIHDS DHLSPGSVLDASFSTESCLSSSLDDNSVCRLLPDFVDTSHDMDQGRTFPKLVTNMLDHISRILQSITLAGGCCQWTSRDLGHAKETILTAELLFGRHSAN RVRSSVLERFLLDEFHALSIHIRSDGDNFIYGMKGSKKEGNNQLRRLLFDCVIEWLDLRCRKYCDSSYRTWRQLLPPQEWCTQLVNEEVGVEMKRWTNME GMIPDEILELEIGQSMGKWTEFEMESCEISRDIVEALLEEIVRELWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67040			unknown protein		Lus10017607 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	2.6	0.9640
AT1G67040			unknown protein		Lus10033565 [exp]	3.0	0.9542
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	4.0	0.9637
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	4.2	0.9404
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	4.5	0.9375
AT1G77270			unknown protein		Lus10029729 [exp]	5.8	0.9310
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	7.4	0.9454
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	8.5	0.9469
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	8.5	0.9449
AT4G36090			oxidoreductase, 2OG-Fe(II) oxy...		Lus10028671 [exp]	9.2	0.8720

Compare expression of checked genes

Lus10017607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.