Plant FIBer expression Database

Lus10017608 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38300 65 / 2e-12 unknown protein
AT1G67035 57 / 1e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033566
[exp]
281 / 1e-96 AT5G38300 125 / 3e-35 unknown protein
Lus10023528
[exp]
172 / 1e-53 AT5G38300 65 / 2e-12 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G116100
[exp]
125 / 3e-35 AT5G38300 120 / 8e-33 unknown protein
Potri.004G098200
[exp]
83 / 3e-20 AT5G38300 69 / 5e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10017608 pacid=23155481 polypeptide=Lus10017608 locus=Lus10017608.g ID=Lus10017608.BGIv1.0 annot-version=v1.0
ATGTCGGCGAATTTCCAGAACCAGACGTTCTTCAACGTCCTCGATCCAATGTCTTTGATTCTCTCACACAACTCCTCCTATTCTCCCGACCCCGCCCCTC
TCAAACTCATCACCGAGGCCTACTTCTTGGAGCGGGGCCCGCGCTACTCTGCTTACGCAGAGCTCAGGGAATCAAAACTACGTACCAGGACCGGAACGAC
GCACCAGTCACCGGAGACCGACGAGACCGAGTCGTGGAGGAGGAAGACTCCGCCTCCTGTTCCGGTGAGGAAGAAGCAGGTCAAATTCCAACAGAAGCAC
CAATCCCATCTCCCTCCTCCCCCTGTTTCGAGGAGGAGGGTTTCGGGGTACGGGGTGGCTCAGTCGGTGCCGGATTTCTCAGCGACGTTGAGGAAGGAGA
ATAGGAAGCCACCTTCTCCGGTTGGGCATCTGACGCCTCCGCCGTGTAAGAGCGGGTCGAAACTGCAGGGCGTGCTTTCTTCTTCTTCCAGAGGGAGTAA
GTCGGTTGGTTCAGGGGAGAAGAGAAGACCGATTGGTAACGGCGGATTGATGGCGGCGAGGAAGAGCTATGCCAACGTGGAGGAATTGAAGGGATTGTCG
ACGGTGAATGGGGAAAGCAGGAGAGTGATTAGTGGTCGGGGAATCGGTGGAAAGACAACCGTACTTGGGTACCGGCAATTGTTCTGA
AA sequence
>Lus10017608 pacid=23155481 polypeptide=Lus10017608 locus=Lus10017608.g ID=Lus10017608.BGIv1.0 annot-version=v1.0
MSANFQNQTFFNVLDPMSLILSHNSSYSPDPAPLKLITEAYFLERGPRYSAYAELRESKLRTRTGTTHQSPETDETESWRRKTPPPVPVRKKQVKFQQKH
QSHLPPPPVSRRRVSGYGVAQSVPDFSATLRKENRKPPSPVGHLTPPPCKSGSKLQGVLSSSSRGSKSVGSGEKRRPIGNGGLMAARKSYANVEELKGLS
TVNGESRRVISGRGIGGKTTVLGYRQLF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38300 unknown protein Lus10017608
[exp]
0 1
AT5G16250 unknown protein Lus10026857
[exp]
13.0 0.8569
AT1G31335 unknown protein Lus10036190
[exp]
13.6 0.8417
AT5G38300 unknown protein Lus10033566
[exp]
16.7 0.8024
AT4G24265 unknown protein Lus10007441
[exp]
23.5 0.8049
AT1G31460 unknown protein Lus10034756
[exp]
35.7 0.7779
AT1G23790 Plant protein of unknown funct... Lus10013006
[exp]
50.2 0.8020
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10006853
[exp]
62.6 0.7911
AT5G50890 alpha/beta-Hydrolases superfam... Lus10007331
[exp]
63.0 0.7905
AT3G27520 unknown protein Lus10022283
[exp]
88.7 0.7175
AT2G33400 unknown protein Lus10011782
[exp]
97.4 0.7670

Lus10017608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.