Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 622 / 0 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 296 / 2e-93 Major facilitator superfamily protein (.1) AT1G67300 274 / 4e-85 Major facilitator superfamily protein (.1.2) AT1G79820 263 / 4e-81 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G43330 159 / 3e-42 ATINT1 inositol transporter 1 (.1) AT3G05150 157 / 7e-42 Major facilitator superfamily protein (.1) AT2G20780 149 / 2e-38 AtPLT4 Major facilitator superfamily protein (.1) AT1G54730 147 / 2e-38 Major facilitator superfamily protein (.1.2.3) AT2G16130 148 / 3e-38 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT1G50310 146 / 2e-37 ATSTP9 sugar transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033568 [exp] 878 / 0 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10009158 [exp] 760 / 0 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 755 / 0 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 267 / 7e-82 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 255 / 2e-77 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 233 / 3e-69 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10031637 [exp] 165 / 4e-44 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10033702 [exp] 162 / 6e-43 AT2G20780 691 / 0.0 Major facilitator superfamily protein (.1) Lus10018581 [exp] 160 / 2e-42 AT2G20780 763 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 641 / 0 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.017G116400 [exp] 490 / 3e-171 AT5G16150 477 / 4e-167 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 289 / 1e-90 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 282 / 2e-88 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 266 / 4e-82 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G032200 [exp] 159 / 5e-42 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.013G135200 [exp] 155 / 7e-41 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.007G024300 [exp] 152 / 8e-40 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 151 / 3e-39 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.010G026500 [exp] 150 / 3e-39 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10017610 pacid=23155541 polypeptide=Lus10017610 locus=Lus10017610.g ID=Lus10017610.BGIv1.0 annot-version=v1.0 ATGCCGTCAGCAGCGACGTTTGTCGTGAAAGCCAGATTGGGCGGGGTTTATGGTTTGGACGCCGCTGGATTAGGATTACATCATGAGCTGGGGTGGAGGA AGCGGCAGAACGTTCGATTCATCGCTGGTTCTGCCGATTTCCGCCGCAGTGGGAGGTTGGCGAATTCGGTATCGTTGAAAGCATGTAGCAGCTTCACTTC TTACTCCGGATTGCGTAATGATTCTGTCCCGAAGATGGTGACCGAGCTTGTACGTCCAAATTTCTTCAGGAACCGACCAGTCAGAGCTCTATCTTCCGAT GGTGATATTGAAGATATGGCTCCGTCAAGGGGTGATCAAAATCTGTCGTTGCTAAAAGCAACGTCTACTGGAACGGTTCTGCCATTTGTAGCTGTTGCTT GTCTGGGAGCTACTCTGTTTGGTTATCACCTGGGGACGTGTCTTCAGAACTATAATTGTCTTGCCTTGTTTTTATTTTTCCCCTACTTATCAAAGCGTGC TCCTCTTTACTGCTTCAGAGTGGTGAATGGTGCTCTTGAGTACCTAGCCAAGGATCTTGGGATTGCTGAGAACACAGTCTTACAAGGGTGGATTGTTAGT ACACTACTTGCTGGTGCCACTCTCGGTACATTTACCGGAGGTGCATTGGCTGACAAATTTGGCAGAACAAAGACATTTCAGTTAGATGCAATCCCACTCA CAATTGGAGCAATTCTTTGTGCCACTGCCCAGAATGTACAGACCATGATAATCGGCCGGTTTCTTGCTGGTATTGGAATTGGCATCTCTTCTGCTATTGT GCCACTTTACATATCTGAGATCTCGCCCACTGAAATTCGAGGCGCACTGGGTTCTGTAAACCAACTTTTCATATGCATTGGGATTCTTTTGGCGCTGGTG GCAGGATTACCTTTAGCTGGAAACCCCTTATGGTGGCGTACAATGTTTGGCATTTCTGCTGTGCCTTCCATTTTGTTAGCACTTGGAATGGCATTTTCTC CTGAAAGCCCTAGATGGCTGGTCCAGCAAGGGAAAATCCCTGAAGCGGAGAAGGCCATACAGACACTTTATGGGAAAGAACGAGTGTCTGCAGTCATGCA AGATTTGAGCGCGTCTGGTCAAGGTTCATCAGAGCCTGAGGCAGGATGGCTTGATCTATTTAGTAGCCGTTATTGGAAAGTTGTAAGTGTGGGGGTAGCA CTTTTCTTTTTCCAACAGATGGCTGGCATAAATGCTGTAGTCTACTATTCGACTGCTGTGTTTCGAAGTGTTGGAATAGGATCTGATGTTGCAGCAAGTG CCCTTGTCGGAGCCTCAAATGTTCTCGGCACAACCATTGCCTCATCTTTGATGGACAAACAAGGAAGGAAAAGCCTGTTGGTCACAAGCTTCTTAGGAAT GGCTGCGTCAATGTTGCTGCTTTCCTTGTCTCTAACTTGGAAGGTGCTGGCACCCTATTCCGGCACGCTTGCTGTTCTTGGGACAGTTTGCTATGTCCTG TCTTTTTCACTTGGGGCCGGTCCCGTGCCTGCTCTTCTACTTCCAGAGATATTTGCATCAAGAATTAGAGCCAAAGCCGTTTCACTGTCATTGGGAATGC ACTGGGTTGCAAACTTTGTGATCGGCCTTTATTTCTTGAGCACGGTAAACAAGTATGGGATCAGCAAGGTGTACTTGGGGTTTTCAGGCGTCTGTCTTCT GGCTGTTGTGTACATACTTAACAATGTCGTCGAAACAAAAGGAAGATCACTAGAGGAGATTGAACGTGCCCTAACCACCACACCATGA
AA sequence Show only first row Show all	>Lus10017610 pacid=23155541 polypeptide=Lus10017610 locus=Lus10017610.g ID=Lus10017610.BGIv1.0 annot-version=v1.0 MPSAATFVVKARLGGVYGLDAAGLGLHHELGWRKRQNVRFIAGSADFRRSGRLANSVSLKACSSFTSYSGLRNDSVPKMVTELVRPNFFRNRPVRALSSD GDIEDMAPSRGDQNLSLLKATSTGTVLPFVAVACLGATLFGYHLGTCLQNYNCLALFLFFPYLSKRAPLYCFRVVNGALEYLAKDLGIAENTVLQGWIVS TLLAGATLGTFTGGALADKFGRTKTFQLDAIPLTIGAILCATAQNVQTMIIGRFLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILLALV AGLPLAGNPLWWRTMFGISAVPSILLALGMAFSPESPRWLVQQGKIPEAEKAIQTLYGKERVSAVMQDLSASGQGSSEPEAGWLDLFSSRYWKVVSVGVA LFFFQQMAGINAVVYYSTAVFRSVGIGSDVAASALVGASNVLGTTIASSLMDKQGRKSLLVTSFLGMAASMLLLSLSLTWKVLAPYSGTLAVLGTVCYVL SFSLGAGPVPALLLPEIFASRIRAKAVSLSLGMHWVANFVIGLYFLSTVNKYGISKVYLGFSGVCLLAVVYILNNVVETKGRSLEEIERALTTTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10017610 [exp]	0	1
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	14.0	0.7397
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008308 [exp]	21.0	0.6934
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	35.7	0.7078
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10001290 [exp]	36.4	0.6977
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10031501 [exp]	43.0	0.7113
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	48.6	0.7018
AT1G10380			Putative membrane lipoprotein ...		Lus10037078 [exp]	55.5	0.6983
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	58.8	0.6254
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	86.2	0.6873
AT1G29630			5'-3' exonuclease family prote...		Lus10004608 [exp]	121.4	0.6457

Compare expression of checked genes

Lus10017610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.