Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66830 640 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 636 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 581 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 452 / 1e-149 Leucine-rich repeat protein kinase family protein (.1) AT3G57830 359 / 2e-114 Leucine-rich repeat protein kinase family protein (.1) AT2G42290 350 / 4e-111 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 340 / 6e-106 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 311 / 2e-95 RLK receptor-like kinase (.1) AT1G68400 273 / 6e-82 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 259 / 1e-73 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033569 [exp] 1270 / 0 AT1G66830 665 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 569 / 0 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034108 [exp] 552 / 0 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015799 [exp] 420 / 5e-137 AT1G67510 959 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021022 [exp] 300 / 6e-92 AT3G57830 639 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 298 / 2e-90 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 294 / 5e-89 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 263 / 5e-78 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 258 / 2e-76 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G095700 [exp] 771 / 0 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G119000 [exp] 749 / 0 AT2G01210 711 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 650 / 0 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 637 / 0 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 466 / 4e-154 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 462 / 8e-154 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G057500 [exp] 357 / 1e-113 AT3G57830 707 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G050800 [exp] 355 / 5e-113 AT3G57830 713 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 339 / 1e-105 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G142300 [exp] 326 / 1e-100 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017611 pacid=23155444 polypeptide=Lus10017611 locus=Lus10017611.g ID=Lus10017611.BGIv1.0 annot-version=v1.0 ATGGCACTCTTCCATCTATACTTCACATATCTCTTCATCATTCTCTCCCACTCCTTCCCTCTCTCACACTCCTTAAACGACGAAGGAATTTCCCTTTTCT CCTTCAAGCAATCCCTTCTCAACAATTCTGCAGACTCCCATTTGCTCAACTGGAATCCCTCAGACGACAACCCTTGCTCCTGGGAAGGAATCGTCTGCAA GCTCGGACGAGTCACCTCGCTCATCCTTCCTTACAAGCAACTCACCGGTGTCTTCCATCTCGACGCCACGAATCTCACCCAGCTCCGCCACCTCAATCTC AGAAACAACAATCTATACGGAAGCTTTCCGCCCGAATTCTTCAGAGCAGCTTCAGGGCTGAAAACGCTTATTGTATCAGGAAATTCCTTCTCAGGTCCTA TTCCTGAAGAGATTGGTAATCTTAAATCCCTACAAAGCCTCGATCTTTCTCGAAATTCCTTCAATGGGTCTTTCTCTCTGTCTCTGGTGAACTGCAACAG ATTGAAGCAGCTAATCCTTAGCTCCAACGGATTCTCTGGATCTATACCTGATGGGATTGGGGTTAATTTGGTTATGCTTGCAACTCTCAATTTATCATTC AATGTCTTCAATGGGGAAATCCCTGCTGACTTGGGAAACTTGTTCAGCTTGGAAGGAGCACTTGATCTGTCTCATAATTCCTTCAGCGGTCCAATTCCGT CGAATCTCGGAGCTCTCCCCGAGACAGTCTACATTGATCTCAGTTACAACAATCTGAGCGGTCCGGTTCCGCAGATTCAGACCCTGCTTGATGCAGGGCC CACAGCTTTCGTCGGCAACCCACTCATCTGCGGGCTTCCGACGAAAACTCCGTGCAAGATATCGTTGCCGGAGAAGCCTAAACCAACGGCGGATGATAAT CCGTTGCTGGAACCAGAAAAGCACGAATTACTACGTATTCCGTGTCTTGTCCTTGTTGCAACAATCTTAGGGACATTGCTGGGGATCAGCTTAGTTGCAC TGTCTTTCCTGTACTGGTACAAGAAAGCTCATCCCAGTAAGAAACCGGGAAAGAAGATCGTTGACGAGAGATCAGTGATCAGGAAAGATATGTTCTGTTT CAGAACAGATGATCTGGAGTCGTTGTCCGAGAACATCGATCAGTACGCTTTCGTGGCAATGGAGACCGAGTTGGGTTTCGATCTGGAGCAGCTCCTGAAA GCTTCAGCCTTTCTGCTTGGAACGAGCAGGGTTGGACTTATGTACAAAGTTGTGATAGAAAATGGGTTAACTTTAGCCGTTAGGAGGCTGGAAGATGGAG GGTCTCAGAGGTTTAAGGAATTCCAGGGAGAAGTGGAAGCCATTGGCAAAATCAGGCACCGTAACATCGTCAGACTTCTAGCCTGCTGCTGGTGTCTCAG CGAGAAGCTTCTCATCTACGAATACGTCCCCAACGGGAACTTAGCAACTGCAATTCATGGAAGAAATGGTGTAGCGAATCTGAAGCCAATGTCGTGGTCT GTTCGGCTCAGGATTCTTCGAGGCGTTGCTAGAGGTTTGGTGTATCTCCACGAATGCAATCCCAAGAGGTATGTCCATGGCCATCTGAAGCCAACTAGCA TACTCCTTGGAGAGGCAATGGAGCCGCAAATAGCCGATTTTGGACTCAATCGCCTAGCTAGCACAACAGCTGAGGATTCCATGGAATCGCAGCCAGAAAG CAGGACGCCTTCTCAGTGTTCCCCGTACGCTTTAACACCGGTAAGCTTTAGAAGCAGCAAGGGATGGTTCGAGTACGAAGCTCCTGAGGTAGCTGCGAGA CCAGCTTCGACAAAGCCATCACAGAAATGGGATGTCTACTCCTACGGAGTTATCCTTCTGGAGACGGTCACCGGAAAAGCACCGATGATCATGCGTGCCA CCAGCGGTTCCGAAATGGATTTGGCCAGATGGGTTCAGCTTAGCCTCGAAGTTAGTAAACCAGTTTCCGATATAGCGGATCCCTTCTTGGCACAGGATCC CGACAAGGAAGACCAGATGGCTGCTGCGCTTAAGATCGGTCTAGCCTGTGTCAATGCGAGCCCCGACAAGAGGCCTTCCATCAGAAATGTCAGCATTGCC TTGGACAAATTGGCTGCTGTATAG
AA sequence Show only first row Show all	>Lus10017611 pacid=23155444 polypeptide=Lus10017611 locus=Lus10017611.g ID=Lus10017611.BGIv1.0 annot-version=v1.0 MALFHLYFTYLFIILSHSFPLSHSLNDEGISLFSFKQSLLNNSADSHLLNWNPSDDNPCSWEGIVCKLGRVTSLILPYKQLTGVFHLDATNLTQLRHLNL RNNNLYGSFPPEFFRAASGLKTLIVSGNSFSGPIPEEIGNLKSLQSLDLSRNSFNGSFSLSLVNCNRLKQLILSSNGFSGSIPDGIGVNLVMLATLNLSF NVFNGEIPADLGNLFSLEGALDLSHNSFSGPIPSNLGALPETVYIDLSYNNLSGPVPQIQTLLDAGPTAFVGNPLICGLPTKTPCKISLPEKPKPTADDN PLLEPEKHELLRIPCLVLVATILGTLLGISLVALSFLYWYKKAHPSKKPGKKIVDERSVIRKDMFCFRTDDLESLSENIDQYAFVAMETELGFDLEQLLK ASAFLLGTSRVGLMYKVVIENGLTLAVRRLEDGGSQRFKEFQGEVEAIGKIRHRNIVRLLACCWCLSEKLLIYEYVPNGNLATAIHGRNGVANLKPMSWS VRLRILRGVARGLVYLHECNPKRYVHGHLKPTSILLGEAMEPQIADFGLNRLASTTAEDSMESQPESRTPSQCSPYALTPVSFRSSKGWFEYEAPEVAAR PASTKPSQKWDVYSYGVILLETVTGKAPMIMRATSGSEMDLARWVQLSLEVSKPVSDIADPFLAQDPDKEDQMAAALKIGLACVNASPDKRPSIRNVSIA LDKLAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	2.4	0.9167
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	3.5	0.9010
AT3G62110			Pectin lyase-like superfamily ...		Lus10009972 [exp]	5.3	0.8896
AT5G07620			Protein kinase superfamily pro...		Lus10042988 [exp]	6.9	0.8346
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10019414 [exp]	7.7	0.8661
					Lus10026092 [exp]	8.5	0.8782
AT5G01890			Leucine-rich receptor-like pro...		Lus10014174 [exp]	9.5	0.8984
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	9.5	0.8730
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	10.6	0.8544
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10023580 [exp]	11.4	0.8863

Compare expression of checked genes

Lus10017611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.