Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16220 131 / 5e-33 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 116 / 2e-27 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT3G18230 108 / 8e-25 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G25300 84 / 5e-18 Octicosapeptide/Phox/Bem1p family protein (.1) AT4G05150 86 / 1e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 85 / 2e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 85 / 3e-17 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G26510 79 / 7e-17 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT5G49920 76 / 5e-15 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G70640 72 / 2e-14 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033570 [exp] 769 / 0 AT5G16220 194 / 9e-56 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007965 [exp] 112 / 8e-27 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10034643 [exp] 110 / 2e-26 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10007952 [exp] 108 / 1e-24 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10002588 [exp] 99 / 4e-22 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10013495 [exp] 100 / 8e-22 AT2G01190 176 / 1e-46 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 91 / 2e-19 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 87 / 2e-19 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10018412 [exp] 89 / 1e-18 AT4G05150 304 / 1e-98 Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119100 [exp] 279 / 6e-88 AT5G16220 126 / 2e-31 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G095600 [exp] 269 / 5e-84 AT5G16220 140 / 2e-36 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 120 / 1e-28 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 112 / 4e-26 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 110 / 2e-25 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 94 / 2e-20 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 94 / 3e-20 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 84 / 7e-17 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 82 / 2e-16 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G046400 [exp] 75 / 3e-15 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10017612 pacid=23155537 polypeptide=Lus10017612 locus=Lus10017612.g ID=Lus10017612.BGIv1.0 annot-version=v1.0 ATGATGGAGCCACCAACCGGAGCTTCTAAACTCCGACTCATGTGCAGTTACGGCGGCAACATAATCCCCCGCCATCAGACCAAATCCCTCTTCTACGCCG GTGGCGACACTCGCATCATTACCGTCCCTACAACTGCCGCCGCCAATCTCACTCTCAATTTCCTCGCCGCTCAATTGGCCGCCGCTCTACGCCTCTCGAC GCCGTTCAACCTCAAGTACCAGCTCCCTTACCATGACCTGGACTCTCTCATCACTCTCTCTAACGACGAGGACGTCGCCATCATGATCGATGAATACAAC CGCGCTTTCTCGTCCCCTGCTCGGATCAGATTGTTCGTCTTCCCAGCCAAACAGGCTGTCAAGGCCGTTTCTAAATCGGTGGAGCTCGGGATCAGCGAGT TTACTCATCCGAAGAAAGAGAGCTGGTTCGTCGATGTGTTGGAGAGCGCCAAGATTATGCAAAGAGGGGGAGCGGTAGGGTTTGTCGGGGAAGGCCACGG AGAGGGAAATAACAATGGTGGTGATACGATCGTTGGACGTTGTGGAGCTGAGTCGATTGTTCTTGAGACTAGCTTGTCTTTTGGATCGACTTCGTCATCC GGTTCTTCCTCTAGTTCACCTGCCAAATGCCAGATCGAGGATGCTGGAGCTGGTTTGCAGGATAACAAAGTGAAATCATCAGCTCCAGAACCAATTCCCA GTGATAAAGGCTTAGGAGCTCCAATTTCTCAGCATAACCAGGATTCGATTGGTTTTATTACCACTATGGAGGGTAAAGTTGCAAGTAATCCAATTGAGCC AGAGATGAAAACATCTGATGTTACTGCTGAGGCAAAGATGACCGGATCAGCTCCGACATCCATGGTTCCTTCACAGTTTCAATATGATCAGCCACAGCAA GTTCAGTATATCCATGCCCCTACTGGCTTACAATATGTGAACTCCAATCAAGCTGGTGTAATGCAGATGCCTTCCTATTACATGATGAATCCTCCAATGA CGCAGCAGCCGTTCTATTACCAGACCAACCAACCGCAACCAATTTACTTCATCCAGGTACCGCCACAGACATGTAACATGCCTATGCAGCAGAATGGTCT GGTTAGCTCGTCAACAGTTCCGTCAAGTAGACCACCATTGCATCCAAACTCCTCTCTGAACCCTGCACAAGTGAGTCACAAGGTTGCAGCCATTCCATCA CAACCCGAGTTAACTTCTCAAGCCTATACCAGAGCCACCCCGGCAAGTCCACTTGCCTATGTACCTCCTACCAGTAGCCATCTGCAAATGAATCTTCAAG CTCAGCCTGCTGCTGTTGCTCCGGTGGAGGAATTGAACTACATCAACGAAGATGACCATGATGCAACTCATGCTCAGATATACAAATCTCAGCCTCCTCC TCCGGCACTGCCATCTCCGTACCAAACCGTGACCAAAGCTCCAACAACTTTATTAGCAGATGCCCTGGCCCAGTTGCATACAGATGGTAACCTCAAGCCT CAGGTCGTAACCTCGCAGCAACAATGA
AA sequence Show only first row Show all	>Lus10017612 pacid=23155537 polypeptide=Lus10017612 locus=Lus10017612.g ID=Lus10017612.BGIv1.0 annot-version=v1.0 MMEPPTGASKLRLMCSYGGNIIPRHQTKSLFYAGGDTRIITVPTTAAANLTLNFLAAQLAAALRLSTPFNLKYQLPYHDLDSLITLSNDEDVAIMIDEYN RAFSSPARIRLFVFPAKQAVKAVSKSVELGISEFTHPKKESWFVDVLESAKIMQRGGAVGFVGEGHGEGNNNGGDTIVGRCGAESIVLETSLSFGSTSSS GSSSSSPAKCQIEDAGAGLQDNKVKSSAPEPIPSDKGLGAPISQHNQDSIGFITTMEGKVASNPIEPEMKTSDVTAEAKMTGSAPTSMVPSQFQYDQPQQ VQYIHAPTGLQYVNSNQAGVMQMPSYYMMNPPMTQQPFYYQTNQPQPIYFIQVPPQTCNMPMQQNGLVSSSTVPSSRPPLHPNSSLNPAQVSHKVAAIPS QPELTSQAYTRATPASPLAYVPPTSSHLQMNLQAQPAAVAPVEELNYINEDDHDATHAQIYKSQPPPPALPSPYQTVTKAPTTLLADALAQLHTDGNLKP QVVTSQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10017612 [exp]	0	1
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	1.0	0.9413
AT3G58610			ketol-acid reductoisomerase (....		Lus10011918 [exp]	4.5	0.8487
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10041870 [exp]	11.0	0.8175
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031267 [exp]	15.5	0.7553
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10023476 [exp]	18.7	0.7603
AT4G36130			Ribosomal protein L2 family (....		Lus10025966 [exp]	21.2	0.7910
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	23.2	0.8010
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	27.3	0.7859
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	28.5	0.7866
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	29.4	0.7897

Compare expression of checked genes

Lus10017612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.