Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62650 48 / 2e-07 unknown protein AT2G47485 47 / 4e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033571 [exp] 256 / 3e-89 AT2G47485 43 / 9e-06 unknown protein Lus10009157 [exp] 174 / 7e-57 AT2G47485 57 / 6e-11 unknown protein Lus10028487 [exp] 168 / 1e-54 AT2G47485 52 / 4e-09 unknown protein Lus10009156 [exp] 168 / 1e-54 AT2G47485 50 / 2e-08 unknown protein Lus10028488 [exp] 164 / 4e-53 ND 48 / 1e-07 Lus10036328 [exp] 40 / 0.0001 AT2G47485 87 / 2e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G119800 [exp] 111 / 5e-32 AT2G47485 66 / 2e-14 unknown protein Potri.004G095200 [exp] 102 / 7e-29 AT2G47485 58 / 2e-11 unknown protein Potri.004G095150 [exp] 102 / 7e-29 AT2G47485 58 / 2e-11 unknown protein Potri.010G119200 [exp] 91 / 3e-24 AT2G47485 57 / 3e-11 unknown protein Potri.012G053400 [exp] 45 / 8e-07 ND / Potri.002G200000 [exp] 44 / 5e-06 AT2G47485 106 / 3e-30 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017613 pacid=23155495 polypeptide=Lus10017613 locus=Lus10017613.g ID=Lus10017613.BGIv1.0 annot-version=v1.0 ATGGAACTCGTTCCCAAAAAACTCTACAGCTCGTTCAGCAGGTACTGGAGGAGAAAGAGATACCAACGGATCCACGACGGCGCTGTCCGGAACAAGACTG CCCGGATCACCAGGCTCGGCCGTCACAGCGACAACAACAACAACAACCGCGCGAGGAAGCTGGTGTGGAGGATTAAGGTGGTCCCCAAGCTGCGGCTGAG AGTGGTCGCTCGTGCGCCGTTGAAGCTTGCTGGGAAGCTGAAGAACGGTTACTTGGATATGATGGTGAGGATTGCAGGCACCGTGGGGCAGTTGAATACA GAGCGAGTGTTCGGGAACAAAAGGGTTCCCAAAGCAAGGCAGCTCGGGATGGGTGATGCTAATTTGGATTTCGACAGTCGGATTATTTACGAGATGGTTA AGAACATCTCTGCCGCTCATGAATTGTCTCCCATGTAA
AA sequence Show only first row Show all	>Lus10017613 pacid=23155495 polypeptide=Lus10017613 locus=Lus10017613.g ID=Lus10017613.BGIv1.0 annot-version=v1.0 MELVPKKLYSSFSRYWRRKRYQRIHDGAVRNKTARITRLGRHSDNNNNNRARKLVWRIKVVPKLRLRVVARAPLKLAGKLKNGYLDMMVRIAGTVGQLNT ERVFGNKRVPKARQLGMGDANLDFDSRIIYEMVKNISAAHELSPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62650			unknown protein		Lus10017613 [exp]	0	1
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	1.4	0.9873
AT3G11840		PUB24	plant U-box 24 (.1)		Lus10004191 [exp]	2.8	0.9859
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10010544 [exp]	3.7	0.9790
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10030708 [exp]	4.2	0.9831
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10031100 [exp]	8.5	0.9845
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034229 [exp]	8.9	0.9804
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	9.2	0.9836
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10029035 [exp]	9.3	0.9849
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10029369 [exp]	14.1	0.9774
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022191 [exp]	14.1	0.9739

Compare expression of checked genes

Lus10017613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.