Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66840 172 / 4e-46 PMI2, WEB2 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) AT5G38150 129 / 2e-31 PMI15 plastid movement impaired 15, Plant protein of unknown function (DUF827) (.1) AT5G55860 45 / 0.0002 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033572 [exp] 892 / 0 AT1G66840 274 / 2e-83 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 52 / 1e-06 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 49 / 9e-06 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10039107 [exp] 45 / 0.0003 AT1G12150 360 / 5e-118 Plant protein of unknown function (DUF827) (.1) Lus10038751 [exp] 44 / 0.0005 AT1G12150 354 / 5e-116 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G118900 [exp] 355 / 6e-114 AT1G66840 305 / 5e-95 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.004G095800 [exp] 333 / 1e-105 AT1G66840 314 / 1e-98 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2, plastid movement impaired 2, Plant protein of unknown function (DUF827) (.1) Potri.001G369200 [exp] 79 / 6e-15 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10017614 pacid=23155443 polypeptide=Lus10017614 locus=Lus10017614.g ID=Lus10017614.BGIv1.0 annot-version=v1.0 ATGGATAAAACAGCATCAGACGGTCGGAGAGGAATCGGGACGGTTAAAGCCGCCGTTAGCATGTTCGGAGGAGAGAGACTCTCCGATGGAACAAGGCAGA AATCCAACACCGGTTACACTGCGGAGCCGCCTTCGAGAACCAAGGATCTCCACATGGCGAAGAGAGACATGGCTAAGTACAGAGGAAGGCAAAGGTCTGC AGACTCCGTCAAAACCCAAGCTGAATCAGAGCTGTCTCAGGCCAAAAGGGCTGTCAAAGACCTCGCTTCACAGATTGAGGAATCCAACGCCAAATTGATT TCCAGGAAGAAGGGTGTGGAAGAAGAAGAAGAATCCCCAAATCCGCCTGCAACGACGCCAGTCTCCGCCGCCGAGGAAGAGGAGAGTGCCAGCATGAAAT CGGCCGATTACCTCCGAGTGATGAAGGAGCTGGAATTCGTTAAGAAAGAGCTCAGCAAGCTGAAGCTTGGGATGGCCACCATCATGGAGGAGAAATTGGA GGCGGAGAAAGCCTCGCAGCAATCGAATGCTGCAGCAAGCTCTGCAGAGGCGGCAATAAGGAAGGAAATTGAGGAAGCGAATGAGGAGCAGGTACTCGTT GAGCTAGCGACGATAGAGGCGTTGAAAGAGAAGCAGGATATTGAATCACGGCGGGAGAAGGAAGTTTCCGAATTCTCAGCAAAAGCTGAAGAGACGAGGA AGAAGATCAACGAAGCACTAGAAGAGATTGATAGCTCCAAAGAGGTGGAGTCACAGCTAGCTGTTACTCTGTACGACGCTGCTGTTTTACAGAACGAGCT GAAGCAGGCGAGAGTCATGGAGAGGAAGATTCAGAGGCGCGGTGTTGGTGGCAGCTTCGGGAGTTCAGCCAGTTCTTCGTCGAAGAGAAGAGAAGAAGGG AGTGGAGGTTCAGGTTCGTCGTTGTTGAACTCCATCACGAAGGAACTGGAGGATGCGAAGAAAGAATTGGAGACGGTTAAAGAGGAAGGGATTCAGTTCA TGAGCTCCATGGACATAATCAGGAACGAGCTGAATCACGTGAAGGAAGAGGCGAATCGACTGAAGAAAGCAGAGGAAAAGACGGATTCGACGGTTCAGAA TCTGAAATCGAAGCTTCTTAAGGGGAAATCCAAATTGGAGGCGGCAACCTCCGCCGAAGAGAAGGCGAAATCGGTAGCGTCGAACCTTAGTCTCACACTG CAGCAATTGGAAACGGAAGCTGAGATTGCAAAGAAGGAAAAGGATATAATCGGAGCGGAGACGGAGAAGATCAAGGCGGAGATTCAGAAGACGGAAACGG AAATCGACATAACGGAGGAGAAACTGGAAGCGGCGATGGAGGAGTTCGAGACTATCAAGGCGAAGGAGGCTTCAACTATGAAGAATCTACAAATTCTCGT AGAGGACGCTATGGATGCCAGAGAATCGGCTTTGAAAGAAGGAAATTCGACGATCCATCTGTCGAGATTCGAGTACGATTACCTGAATGAGAGAGCGGCG AAGGCGGAGGAGATAGCGGATCTGAAGGTGGCTGCAGCACAGGCGTGGATTGAGGCGTTGAAGGCGAGCGAGAAGGAGATACTGATGAAAGTCGAAATCG CGCATAGGGAGCTTAGGGAGACGAAGGTGGAGGAAGAGAGGTCGATTGTTGCGATGAATACAGCAGCGGCGGCTGCTCAAGGAGATGTAACGAATTTGAA GCAACAGCATCGTCGTCGGAGCAATGTGGGAGGCAGGAAAAGGTCGGGGAGTGAAACTCCGAGGAGAATTGCAAGAGCAAGTAGTAGCGGTACTCCTACG AGGATGCGTTTGAAGCTGAGGAACACTGAGTTTTCACCCAGTCGGACGACTACCCGATCCACCTCTGTGCCGATGAAGAAGAAATCGTCGATGCCTAATC TGTCAATGATGTTGAAGCCCCAAGAAAACCGATAA
AA sequence Show only first row Show all	>Lus10017614 pacid=23155443 polypeptide=Lus10017614 locus=Lus10017614.g ID=Lus10017614.BGIv1.0 annot-version=v1.0 MDKTASDGRRGIGTVKAAVSMFGGERLSDGTRQKSNTGYTAEPPSRTKDLHMAKRDMAKYRGRQRSADSVKTQAESELSQAKRAVKDLASQIEESNAKLI SRKKGVEEEEESPNPPATTPVSAAEEEESASMKSADYLRVMKELEFVKKELSKLKLGMATIMEEKLEAEKASQQSNAAASSAEAAIRKEIEEANEEQVLV ELATIEALKEKQDIESRREKEVSEFSAKAEETRKKINEALEEIDSSKEVESQLAVTLYDAAVLQNELKQARVMERKIQRRGVGGSFGSSASSSSKRREEG SGGSGSSLLNSITKELEDAKKELETVKEEGIQFMSSMDIIRNELNHVKEEANRLKKAEEKTDSTVQNLKSKLLKGKSKLEAATSAEEKAKSVASNLSLTL QQLETEAEIAKKEKDIIGAETEKIKAEIQKTETEIDITEEKLEAAMEEFETIKAKEASTMKNLQILVEDAMDARESALKEGNSTIHLSRFEYDYLNERAA KAEEIADLKVAAAQAWIEALKASEKEILMKVEIAHRELRETKVEEERSIVAMNTAAAAAQGDVTNLKQQHRRRSNVGGRKRSGSETPRRIARASSSGTPT RMRLKLRNTEFSPSRTTTRSTSVPMKKKSSMPNLSMMLKPQENR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10017614 [exp]	0	1
AT1G66840		PMI2, WEB2	WEAK CHLOROPLAST MOVEMENT UNDE...		Lus10033572 [exp]	1.4	0.9360
AT1G55480		ZKT	protein containing PDZ domain,...		Lus10010322 [exp]	4.5	0.9404
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	4.6	0.9261
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	5.5	0.9226
AT1G28140			unknown protein		Lus10034291 [exp]	6.0	0.9250
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	6.1	0.8923
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	7.4	0.9230
AT1G42550		PMI1	plastid movement impaired1 (.1...		Lus10039886 [exp]	12.0	0.9182
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	13.0	0.9206
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	15.9	0.9196

Compare expression of checked genes

Lus10017614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.