Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38220 417 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 360 / 9e-125 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 341 / 5e-116 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 340 / 6e-116 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 334 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 324 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G31020 296 / 2e-99 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 294 / 9e-99 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 275 / 2e-90 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 271 / 6e-88 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033575 [exp] 528 / 0 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10028497 [exp] 427 / 2e-150 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 329 / 1e-110 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 326 / 8e-110 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 322 / 2e-108 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 310 / 6e-104 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040038 [exp] 304 / 1e-102 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 303 / 1e-100 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 299 / 2e-100 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117633 [exp] 451 / 9e-160 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 444 / 5e-157 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.012G090800 [exp] 354 / 3e-121 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 348 / 1e-118 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 346 / 6e-118 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 335 / 2e-113 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 334 / 6e-113 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 327 / 3e-110 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 313 / 5e-105 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 308 / 5e-104 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10017617 pacid=23155525 polypeptide=Lus10017617 locus=Lus10017617.g ID=Lus10017617.BGIv1.0 annot-version=v1.0 ATGGGCGGAGTCACCTCGTCAATTGCCGCGAAATTTGCCTTCTTCCCTCCCAGTCCGCCGTCTTACTCTGTAGTAGTAGCTGAAGATTCCGGCGGCGGCG ACGGGAAGCCACTGCATATACCGGAGATTCCGAGGAGGGATGACGTGGATGTCCTGAAGCTGCCCACTCGGCGAGGGAACGAAATCGTCGCCGTCCATAT AAAGCATCCAAGGGCTTCCGCTACGCTGCTGTATTCCCATGGGAATGCAGCCGATTTGGGGCAGATGTACGAGCTCTTCGTCGAGCTCAGCAATCGTCTT CGGGTTAATCTCATGGGCTATGATTACTCCGGTTATGGACGTTCAAGTGGAAAGCCAACAGAGTACAACACGTACGTGGACATAGATGCTGCATACAATT GCCTCAAGGATCGGTACGGAGTTAAAGACGAAGATCTGATACTGTATGGTCAGTCTGTTGGCAGCGGACCAACGATTGATCTCGCTTCCCGTTTGCCGAC TTTAAGAGGTGTGGTTCTCCACAGTCCACTTCTTTCCGGAATGAGGGTACTATATGCAGTCAAAAGAACATACTGGTTCGACATTTACAAGAACATCGAC AAAATGGGTTTGGTGAAGTCCCCCGTCTTGATAATTCATGGAACAGCGGATGACGTTGTGGATTGCTCCCACGGGAAGCAACTCTGGGAACTCTGCACGA ACAAGTACGAACCTCTATGGATAAGCGGAGGCGGCCACTGCAACCTCGAGCTCTACCCAGAATTCATAAAGCACCTCAAGAAGTTTGTAGTGTCGCTGGC CAAAGCCGCAAAAGCAGCAGCAGCAAACGGAGATTCTAATAAAGCAGCAACACCGACAGAGTCCGAGAACCAAAACAAAGCACCAGATCAGCCCCCGGTG GCTGCAGATACTTTCGAACTCGTCGAAGACCTTCCTCCTCAAGTCTCGAGAAACAGTCTAGACAGCCGAATGGAGAAGAAGTCAAAGAAGTCGACGAGTA AACAGGAGAAGTCTCGAATGAGCACAGACCGCTTCAACAGATTTAGAAGGAAAGGTGGCTTGGTCTGGTGA
AA sequence Show only first row Show all	>Lus10017617 pacid=23155525 polypeptide=Lus10017617 locus=Lus10017617.g ID=Lus10017617.BGIv1.0 annot-version=v1.0 MGGVTSSIAAKFAFFPPSPPSYSVVVAEDSGGGDGKPLHIPEIPRRDDVDVLKLPTRRGNEIVAVHIKHPRASATLLYSHGNAADLGQMYELFVELSNRL RVNLMGYDYSGYGRSSGKPTEYNTYVDIDAAYNCLKDRYGVKDEDLILYGQSVGSGPTIDLASRLPTLRGVVLHSPLLSGMRVLYAVKRTYWFDIYKNID KMGLVKSPVLIIHGTADDVVDCSHGKQLWELCTNKYEPLWISGGGHCNLELYPEFIKHLKKFVVSLAKAAKAAAANGDSNKAATPTESENQNKAPDQPPV AADTFELVEDLPPQVSRNSLDSRMEKKSKKSTSKQEKSRMSTDRFNRFRRKGGLVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	0	1
AT5G14410			unknown protein		Lus10022295 [exp]	12.0	0.7307
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10033575 [exp]	12.1	0.6774
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	13.5	0.7006
AT2G20870			cell wall protein precursor, p...		Lus10039801 [exp]	17.6	0.7063
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	21.2	0.6339
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10025999 [exp]	29.5	0.6521
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10039881 [exp]	31.4	0.6850
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	37.9	0.6653
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10035903 [exp]	39.7	0.6695
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	39.9	0.6818

Compare expression of checked genes

Lus10017617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.